HHsearch alignment for GI: 254780563 and conserved domain: COG4588
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only].
Probab=98.36 E-value=3.1e-06 Score=55.27 Aligned_cols=161 Identities=13% Similarity=0.202 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC-HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 02599999999999998612444588089981899-89999999999987598621000013566765210666557504
Q gi|254780563|r 2 FKRTIYTYLLLLCGFTEAFSTENTTKYLTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITK 80 (195)
Q Consensus 2 mkk~~~~~l~l~~~~~~~~~~~~~~~~lvVYs~~~-~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~~~~~ 80 (195)
T Consensus 1 Mk~~~~i~~~~~La~s~-----~~~adinlYGpGGPhtaL~~vA~~~~ektg~kVnvt~GPq~tW~~kAk-knADilfga 74 (252)
T COG4588 1 MKKAVLILLIFLLAFSS-----AANADINLYGPGGPHTALKDVAKKYEEKTGIKVNVTAGPQATWNEKAK-KNADILFGA 74 (252)
T ss_pred CCHHHHHHHHHHHHHHH-----HHCCEEEEECCCCCCHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHH-CCCCEEECC
T ss_conf 93368899999997246-----404517876699986789999999878748079994188610445641-367456416
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCC---
Q ss_conf 22332343310000123422234720001222223443450588873344013445578888408667685996289---
Q gi|254780563|r 81 DETSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPN--- 157 (195)
Q Consensus 81 d~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~--- 157 (195)
T Consensus 75 seqsalai---a~~~~~~--------f--s~~~i~ply~R~aiIlvkkg--NPk-nIk~~eDll~~gi~--ivV~dGaG~ 136 (252)
T COG4588 75 SEQSALAI---AEDHKDS--------F--SEKNIQPLYLRPAIILVKKG--NPK-NIKGFEDLLKPGIG--IVVNDGAGV 136 (252)
T ss_pred CHHHHHHH---HHHCCCC--------C--CCCCCCEEEEECEEEEECCC--CCC-CCCCHHHHHCCCCE--EEEECCCCC
T ss_conf 48889999---9856333--------5--52025313540217996279--954-44568887057862--998379764
Q ss_pred -CCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCC
Q ss_conf -83049999999996086999999999860887
Q gi|254780563|r 158 -NISFHRLLNTMEQTPNKTVVQDFIKNITANEI 189 (195)
Q Consensus 158 -~~s~~~~~~a~~~~~G~~~~~~~l~~l~~N~~ 189 (195)
T Consensus 137 sntsgtgvwED---~agr~~~ie~v~afR~NI~ 166 (252)
T COG4588 137 SNTSGTGVWED---IAGRKGNIETVAAFRKNIV 166 (252)
T ss_pred CCCCCCEEHHH---HHCCCCCHHHHHHHHHCEE
T ss_conf 47777220486---5410114889999885238