HHsearch alignment for GI: 254780563 and conserved domain: PRK11119
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional.
Probab=94.77 E-value=0.3 Score=26.81 Aligned_cols=162 Identities=7% Similarity=-0.035 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCC---CCCCEEE-ECCC-CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH-HHHHCCCC
Q ss_conf 902599999999999998612444---5880899-8189-9899999999999875986210000135667-65210666
Q gi|254780563|r 1 MFKRTIYTYLLLLCGFTEAFSTEN---TTKYLTL-YTDQ-NQSVMLPIIHSFEERTGVKISPIYTSSIQRP-PITQGSPV 74 (195)
Q Consensus 1 mmkk~~~~~l~l~~~~~~~~~~~~---~~~~lvV-Ys~~-~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~-~~~~~~~~ 74 (195)
T Consensus 1 ~~~~~~l~~~a~~~~~~~~a~a~~~pg~g~tV~~a~~~W~~~~a~t~v~~~~Le~lGY~Ve~~~~~~~~~~~~ala~Gdi 80 (332)
T PRK11119 1 KMRHKVLLATALATLISTSAFAADLPGKGITVQPAQSTIAEETFQTLLVSRALEKLGYDVNKPKEVDYNVFYTSIASGDA 80 (332)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHCCCC
T ss_conf 91188899999999852276525589999778760168408999999999999986998542014446889999855884
Q ss_pred CEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHH------
Q ss_conf 55750422332343310000123422234720001222223443450588873344013445578888408667------
Q gi|254780563|r 75 DVIITKDETSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQW------ 148 (195)
Q Consensus 75 d~~~~~d~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~------ 148 (195)
T Consensus 81 D~~~~~WlP---~~~~~~~~~~~~~~~-------~~~g~~~~--ga~~G~~V~~~~~-d~~~I~si~dLkdp~~a~~Fd~ 147 (332)
T PRK11119 81 TFTAVNWFP---LHDDQYEAAGGDKKF-------YREGVIVG--GAAQGYLIDKKTA-DKYNITNIAQLKDPKIAKLFDT 147 (332)
T ss_pred EEEECCCCC---CCHHHHHHHCCCCEE-------EECCCCCC--CCCEEEEEECCCC-CCCCCCCHHHHHCHHHHHHCCC
T ss_conf 486556176---517999973277647-------64243356--6513689502332-1148578998628678986076
Q ss_pred ----CCEEEECCCCCCHHHHHHHHHHHHCHH
Q ss_conf ----685996289830499999999960869
Q gi|254780563|r 149 ----KKRLSIAPNNISFHRLLNTMEQTPNKT 175 (195)
Q Consensus 149 ----kG~i~~~~~~~s~~~~~~a~~~~~G~~ 175 (195)
T Consensus 148 ~~~GKg~i~g~~pGwg~~~~~~~~i~~ygL~ 178 (332)
T PRK11119 148 NGDGKADLTGCNPGWGCEAVINHQLKAYGLT 178 (332)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 7788502881488720668999999867996