HHsearch alignment for GI: 254780563 and conserved domain: TIGR01098
>TIGR01098 3A0109s03R phosphonate ABC transporter, periplasmic phosphonate-binding protein; InterPro: IPR005770 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices. This is a family of periplasmic proteins which are part of the transport system for alkylphosphonate uptake. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0030288 outer membrane-bounded periplasmic space.
Probab=97.54 E-value=0.0031 Score=38.13 Aligned_cols=133 Identities=13% Similarity=0.090 Sum_probs=71.3
Q ss_pred CCCEEE-E-CCCC-HH---HHHHHHHHHHHHCCCCCCCCCHHHHHHHH-HHHCCCCCEEEECCHHHHHH-HHHHHCCCCC
Q ss_conf 880899-8-1899-89---99999999998759862100001356676-52106665575042233234-3310000123
Q gi|254780563|r 26 TKYLTL-Y-TDQN-QS---VMLPIIHSFEERTGVKISPIYTSSIQRPP-ITQGSPVDVIITKDETSLAL-NEDLLHKLPA 97 (195)
Q Consensus 26 ~~~lvV-Y-s~~~-~~---~~~~~~~~Fek~tgIkV~~~~~~~~~~~~-~~~~~~~d~~~~~d~~~l~~-~~~~l~~~~~ 97 (195)
T Consensus 50 p~~l~~g~~P~e~~~~~~~~~~pL~~~Lek~Lg~kV~~~~~~dY~a~IEamr~g~~D~a~~g~~sY~~A~~~~~~~~~a~ 129 (299)
T TIGR01098 50 PKELNFGILPGENASNLARRWEPLKDYLEKKLGIKVELFVATDYSAVIEAMRFGRVDIAWFGPSSYVLAHRRANAEAFAL 129 (299)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCHHHEEEECCCCCHHHH
T ss_conf 77268998448875577776689999888755886799861683103342326807898347851232200138701213
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCE-EEECCC-CCCHHHH-HHHHHHHHC
Q ss_conf 422234720001222223443450588873344013445578888408667685-996289-8304999-999999608
Q gi|254780563|r 98 HLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKR-LSIAPN-NISFHRL-LNTMEQTPN 173 (195)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~-i~~~~~-~~s~~~~-~~a~~~~~G 173 (195)
T Consensus 130 ~~~~-----~~~~~----g~~~Y~S~~iv~~d-----S~i~~~~DlL-~~LKGK~~af~Dp~STSG~l~P~~~l~~~~~ 193 (299)
T TIGR01098 130 TAIR-----YVSTD----GSPGYYSVIIVKAD-----SPIKSLKDLL-KKLKGKTFAFGDPASTSGYLVPRYQLLKEGG 193 (299)
T ss_pred HHHH-----HCCCC----CCCCEEEEEEECCC-----CCCCCHHHHH-HHCCCCEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 4433-----11688----89834899998389-----9963389999-7507975985068875124778899876507