HHsearch alignment for GI: 254780563 and conserved domain: TIGR03431

>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=98.40  E-value=1.7e-05  Score=51.12  Aligned_cols=152  Identities=16%  Similarity=0.134  Sum_probs=78.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEE-E-CCCCHH----HHHHHHHHHHHHCCCCCCCCCHHHHHH-HHHHHCCC
Q ss_conf             9025999999999999986124445880899-8-189989----999999999987598621000013566-76521066
Q gi|254780563|r    1 MFKRTIYTYLLLLCGFTEAFSTENTTKYLTL-Y-TDQNQS----VMLPIIHSFEERTGVKISPIYTSSIQR-PPITQGSP   73 (195)
Q Consensus         1 mmkk~~~~~l~l~~~~~~~~~~~~~~~~lvV-Y-s~~~~~----~~~~~~~~Fek~tgIkV~~~~~~~~~~-~~~~~~~~   73 (195)
T Consensus         1 m~~r~l~~~~~~~~~~~~~a~a~~~p~~l~~gv~P~~~~~~~~~~~~Pl~~yL~~~lg~~Ve~~~~~~y~~~~eal~~g~   80 (288)
T TIGR03431         1 MLRRLILSLVAAFMLISSNAQAEDWPKELNFGIIPTENASDLKQRWEPLADYLSKKLGVKVKLFFATDYAGVIEGMRFGK   80 (288)
T ss_pred             CCHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCC
T ss_conf             90889999999999974322430488368999806999999999999999999998789789996899999999998598


Q ss_pred             CCEEEECCHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCE-
Q ss_conf             65575042233234-3310000123422234720001222223443450588873344013445578888408667685-
Q gi|254780563|r   74 VDVIITKDETSLAL-NEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKR-  151 (195)
Q Consensus        74 ~d~~~~~d~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~-  151 (195)
T Consensus        81 ~Dia~~~p~~yv~a~~~~~~~~la~~~---------~~~g~----~~y~s~iivr~D-----s~i~sl~DL-----kGk~  137 (288)
T TIGR03431        81 VDIAWYGPSSYAEAYQKANAEAFAIEV---------NADGS----TGYYSVLIVKKD-----SPIKSLEDL-----KGKT  137 (288)
T ss_pred             CEEEEECCHHHHHHHHCCCCEEEEEEE---------CCCCC----CCEEEEEEEECC-----CCCCCHHHH-----CCCE
T ss_conf             309998847889986525974889985---------15888----645799999899-----988877895-----7987


Q ss_pred             EEECCCC-CCHHHHHHHHH-HHHCHH
Q ss_conf             9962898-30499999999-960869
Q gi|254780563|r  152 LSIAPNN-ISFHRLLNTME-QTPNKT  175 (195)
Q Consensus       152 i~~~~~~-~s~~~~~~a~~-~~~G~~  175 (195)
T Consensus       138 iaf~~~~StSG~l~P~~~L~~~~g~~  163 (288)
T TIGR03431       138 FGFVDPNSTSGFLVPSYYLFKKNGIK  163 (288)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             66028741111399999999865997