HHsearch alignment for GI: 254780563 and conserved domain: TIGR03431
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=98.40 E-value=1.7e-05 Score=51.12 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEE-E-CCCCHH----HHHHHHHHHHHHCCCCCCCCCHHHHHH-HHHHHCCC
Q ss_conf 9025999999999999986124445880899-8-189989----999999999987598621000013566-76521066
Q gi|254780563|r 1 MFKRTIYTYLLLLCGFTEAFSTENTTKYLTL-Y-TDQNQS----VMLPIIHSFEERTGVKISPIYTSSIQR-PPITQGSP 73 (195)
Q Consensus 1 mmkk~~~~~l~l~~~~~~~~~~~~~~~~lvV-Y-s~~~~~----~~~~~~~~Fek~tgIkV~~~~~~~~~~-~~~~~~~~ 73 (195)
T Consensus 1 m~~r~l~~~~~~~~~~~~~a~a~~~p~~l~~gv~P~~~~~~~~~~~~Pl~~yL~~~lg~~Ve~~~~~~y~~~~eal~~g~ 80 (288)
T TIGR03431 1 MLRRLILSLVAAFMLISSNAQAEDWPKELNFGIIPTENASDLKQRWEPLADYLSKKLGVKVKLFFATDYAGVIEGMRFGK 80 (288)
T ss_pred CCHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCC
T ss_conf 90889999999999974322430488368999806999999999999999999998789789996899999999998598
Q ss_pred CCEEEECCHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCE-
Q ss_conf 65575042233234-3310000123422234720001222223443450588873344013445578888408667685-
Q gi|254780563|r 74 VDVIITKDETSLAL-NEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKR- 151 (195)
Q Consensus 74 ~d~~~~~d~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~- 151 (195)
T Consensus 81 ~Dia~~~p~~yv~a~~~~~~~~la~~~---------~~~g~----~~y~s~iivr~D-----s~i~sl~DL-----kGk~ 137 (288)
T TIGR03431 81 VDIAWYGPSSYAEAYQKANAEAFAIEV---------NADGS----TGYYSVLIVKKD-----SPIKSLEDL-----KGKT 137 (288)
T ss_pred CEEEEECCHHHHHHHHCCCCEEEEEEE---------CCCCC----CCEEEEEEEECC-----CCCCCHHHH-----CCCE
T ss_conf 309998847889986525974889985---------15888----645799999899-----988877895-----7987
Q ss_pred EEECCCC-CCHHHHHHHHH-HHHCHH
Q ss_conf 9962898-30499999999-960869
Q gi|254780563|r 152 LSIAPNN-ISFHRLLNTME-QTPNKT 175 (195)
Q Consensus 152 i~~~~~~-~s~~~~~~a~~-~~~G~~ 175 (195)
T Consensus 138 iaf~~~~StSG~l~P~~~L~~~~g~~ 163 (288)
T TIGR03431 138 FGFVDPNSTSGFLVPSYYLFKKNGIK 163 (288)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 66028741111399999999865997