HHsearch results for GI: 254780563 and protein with PDBid: 1a99_A
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1
Probab=99.51 E-value=1.1e-14 Score=102.17 Aligned_cols=164 Identities=15% Similarity=0.147 Sum_probs=105.2
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH---HHHHHCCCCCEEEECCH-HHHHHHHHHHCCCCCCC
Q ss_conf 458808998189989999999999987598621000013566---76521066655750422-33234331000012342
Q gi|254780563|r 24 NTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQR---PPITQGSPVDVIITKDE-TSLALNEDLLHKLPAHL 99 (195)
Q Consensus 24 ~~~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~---~~~~~~~~~d~~~~~d~-~~l~~~~~~l~~~~~~~ 99 (195)
+++++|+||++.++ ..+.++++|||+|||+|++...++.+. ++...+.+.|++..... .......+++++++...
T Consensus 1 A~~~~L~v~~W~~~-~~~~li~~Fek~tGi~V~~~~~~~~~~~~~~l~ag~~~~Dv~~~~~~~~~~~~~~g~l~~l~~~~ 79 (344)
T 1a99_A 1 AEQKTLHIYNWSDY-IAPDTVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSK 79 (344)
T ss_dssp --CCEEEEEEETTC-SCTTHHHHHHHHHCCEEEEEEESCHHHHHHHHHHCCCCCSEECCBHHHHHHHHHTTCBCCCCGGG
T ss_pred CCCCEEEEEECCCC-CCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHCCCCCCCCHHH
T ss_conf 99988999968774-79889999999979989999589999999999828999978998889999999749845132433
Q ss_pred CCC---CCCCCC-------CCCCCCCCCCCCEEEEEEEHHHHCCC----CCCCCHHHHCCHHHCCEEEECCC--CCCHHH
Q ss_conf 223---472000-------12222234434505888733440134----45578888408667685996289--830499
Q gi|254780563|r 100 IKK---NSFVLK-------NENKKLMRISFDTQVLAYSTKRIKIA----DLPKSVFDLTNAQWKKRLSIAPN--NISFHR 163 (195)
Q Consensus 100 ~~~---~~~~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~----~~P~sw~DL~~p~~kG~i~~~~~--~~s~~~ 163 (195)
..+ +.+.+. +...+..|+.....+++||++.++.. .+|++|+||++|+++++...+.. ......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~g~~y~~P~~~~~~~l~Ynk~~~~~~~~~~~p~~tw~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (344)
T 1a99_A 80 LPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEE 159 (344)
T ss_dssp CGGGGGBCHHHHHHHHTTSGGGCSEEEEEEEEEEEEEEHHHHHHHHCTTCCTTSTHHHHSHHHHHHHGGGCEEECSCHHH
T ss_pred HCCCHHCCHHHHHHCCCCCCCCEEEEEEEECCEEEEEEHHHHHHCCCCCCCHHHHHHHHCHHHHCCCCCCCCCCCCCHHH
T ss_conf 20200069888740033348977999999454116777887643028876215778751956530134688666787899
Q ss_pred HHHHHHHHHCH-----------HHHHHHHHHHHHCC
Q ss_conf 99999996086-----------99999999986088
Q gi|254780563|r 164 LLNTMEQTPNK-----------TVVQDFIKNITANE 188 (195)
Q Consensus 164 ~~~a~~~~~G~-----------~~~~~~l~~l~~N~ 188 (195)
++.......|. ....++++.++.+.
T Consensus 160 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (344)
T 1a99_A 160 VFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNI 195 (344)
T ss_dssp HHHHHHHHTTSCTTCCCHHHHHTHHHHHHHHHGGGC
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 999999965988777676788899999975440341