HHsearch results for GI: 254780563 and protein with PDBid: 1twy_A
>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} SCOP: c.94.1.1
Probab=98.84 E-value=1.7e-08 Score=66.98 Aligned_cols=148 Identities=7% Similarity=0.026 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC-HHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 02599999999999998612444588089981899-899999999999875-9862100001356676521066655750
Q gi|254780563|r 2 FKRTIYTYLLLLCGFTEAFSTENTTKYLTLYTDQN-QSVMLPIIHSFEERT-GVKISPIYTSSIQRPPITQGSPVDVIIT 79 (195)
Q Consensus 2 mkk~~~~~l~l~~~~~~~~~~~~~~~~lvVYs~~~-~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~~~~~~~~~~d~~~~ 79 (195)
|+|.++..++.+++.+..++..+++++|+|+.+.+ ..+++.+.++|++++ |++|++..+++.+.+....+..+|+.+.
T Consensus 3 ~~~~~l~~~~a~~~~~~~~~~~a~~~~i~i~gs~s~~~l~~~l~~~f~~~~P~~~v~~~~~gSg~~~~~l~~g~~di~~~ 82 (290)
T 1twy_A 3 LIRMALAAVCALLFSITTMTPFVQASEITISGSTSVARIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMT 82 (290)
T ss_dssp -------------------------CEEEEEECHHHHHHHHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCC
T ss_conf 68999999999999998354302488699996054999999999999988889579997168679999998268641225
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHC---------C--CCCCCCHHHHCCHHH
Q ss_conf 42233234331000012342223472000122222344345058887334401---------3--445578888408667
Q gi|254780563|r 80 KDETSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIK---------I--ADLPKSVFDLTNAQW 148 (195)
Q Consensus 80 ~d~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~---------~--~~~P~sw~DL~~p~~ 148 (195)
..... .... ...-...++.....++++|++--. . ...+++|.|+..|..
T Consensus 83 s~~~~---~~e~-----------------~~~~~~~~ia~~~~~ivv~~~n~~~~ls~~~L~~i~~g~it~W~~~~~~~~ 142 (290)
T 1twy_A 83 SRYLT---ESEA-----------------QNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQ 142 (290)
T ss_dssp SSCCC---TTTC-----------------CTTCEEEEEEEEEEEEEECTTCCCCEECHHHHHHHHHTSCCBGGGGTSCSC
T ss_pred CCCCH---HHHH-----------------HCCCEEEEEEECCEEEEECCCCCCCCCCHHHHHHHHCCCCCCHHHCCCCCC
T ss_conf 54001---3466-----------------345056778860257640577852345898985644287675310489988
Q ss_pred CCEEEECCCCCCHHHHHHHHH
Q ss_conf 685996289830499999999
Q gi|254780563|r 149 KKRLSIAPNNISFHRLLNTME 169 (195)
Q Consensus 149 kG~i~~~~~~~s~~~~~~a~~ 169 (195)
+..+..+++++.....+..++
T Consensus 143 ~i~~~~r~~~Sgt~~~~~~~~ 163 (290)
T 1twy_A 143 KIAVVTREASSGTRYSFESLM 163 (290)
T ss_dssp BCEEEEECTTCHHHHHHHHHH
T ss_pred CEEEECCCCCCCHHHHHHHHH
T ss_conf 417852799972799999996