HHsearch results for GI: 254780563 and protein with PDBid: 1us5_A
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=96.10 E-value=0.062 Score=29.51 Aligned_cols=148 Identities=10% Similarity=0.110 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC---C-HHHHHHHHHHHHHH-CCCCCCCCC-HHHHHHHHHHHCCCCC
Q ss_conf 0259999999999999861244458808998189---9-89999999999987-598621000-0135667652106665
Q gi|254780563|r 2 FKRTIYTYLLLLCGFTEAFSTENTTKYLTLYTDQ---N-QSVMLPIIHSFEER-TGVKISPIY-TSSIQRPPITQGSPVD 75 (195)
Q Consensus 2 mkk~~~~~l~l~~~~~~~~~~~~~~~~lvVYs~~---~-~~~~~~~~~~Fek~-tgIkV~~~~-~~~~~~~~~~~~~~~d 75 (195)
|||.|+..|.+ ++++.+++.|+|-|+. . +.....+.+.+.++ .||+++.+. +++.+.+....+..+|
T Consensus 1 m~~~ila~l~~-------a~~a~A~~~l~i~tg~~gg~~~~~g~~ia~~~~~~~~gi~~~~~~t~Gs~~N~~~l~~g~~d 73 (314)
T 1us5_A 1 MRKPILAALTL-------AGLGLAQEFITIGSGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFE 73 (314)
T ss_dssp -----------------------CCEEEEEECCCTTSSHHHHHHHHHHHHHHHTSSEEEEEECCSCHHHHHHHHHTTSCS
T ss_pred CCHHHHHHHHH-------HCHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCC
T ss_conf 93899999997-------24342331489997999971499999999999735898489998078889999999769971
Q ss_pred EEEEC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCE-EE
Q ss_conf 57504-22332343310000123422234720001222223443450588873344013445578888408667685-99
Q gi|254780563|r 76 VIITK-DETSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKR-LS 153 (195)
Q Consensus 76 ~~~~~-d~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~-i~ 153 (195)
.-+.. +........+-..+.+.....+ ++.- ......+.-+++-. +.-.+++.|| +|| +.
T Consensus 74 ~a~~~~~~~~~~~~~~g~~~~~~~~~~~----lr~v----~~~~~~~~~~~v~~-----ds~I~s~~DL-----~Gkrv~ 135 (314)
T 1us5_A 74 MALAQNDIAYYAYQGCCIPAFEGKPVKT----IRAL----AALYPEVVHVVARK-----DAGIRTVADL-----KGKRVV 135 (314)
T ss_dssp EEEEEHHHHHHHHHTCSSTTTTTCCCTT----EEEE----EEEEEEEEEEEEET-----TSSCSSGGGG-----TTSEEE
T ss_pred EEEECHHHHHHHHHCCCCCCCCCCCCCC----EEEE----EEECHHHHEEEECC-----CCCCCCHHHH-----CCCEEE
T ss_conf 9997508999998466875334575404----0278----87051133133037-----7776778880-----887751
Q ss_pred ECCCCCCHHHHHHHHHHHHCH
Q ss_conf 628983049999999996086
Q gi|254780563|r 154 IAPNNISFHRLLNTMEQTPNK 174 (195)
Q Consensus 154 ~~~~~~s~~~~~~a~~~~~G~ 174 (195)
+-+.++........++...|.
T Consensus 136 ~g~~gs~~~~~~~~~l~~~g~ 156 (314)
T 1us5_A 136 VGDVGSGTEQNARQILEAYGL 156 (314)
T ss_dssp CCCTTCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHCC
T ss_conf 368885136689999998099