HHsearch results for GI: 254780563 and protein with PDBid: 1us5_A

>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=96.10  E-value=0.062  Score=29.51  Aligned_cols=148  Identities=10%  Similarity=0.110  Sum_probs=72.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC---C-HHHHHHHHHHHHHH-CCCCCCCCC-HHHHHHHHHHHCCCCC
Q ss_conf             0259999999999999861244458808998189---9-89999999999987-598621000-0135667652106665
Q gi|254780563|r    2 FKRTIYTYLLLLCGFTEAFSTENTTKYLTLYTDQ---N-QSVMLPIIHSFEER-TGVKISPIY-TSSIQRPPITQGSPVD   75 (195)
Q Consensus         2 mkk~~~~~l~l~~~~~~~~~~~~~~~~lvVYs~~---~-~~~~~~~~~~Fek~-tgIkV~~~~-~~~~~~~~~~~~~~~d   75 (195)
                      |||.|+..|.+       ++++.+++.|+|-|+.   . +.....+.+.+.++ .||+++.+. +++.+.+....+..+|
T Consensus         1 m~~~ila~l~~-------a~~a~A~~~l~i~tg~~gg~~~~~g~~ia~~~~~~~~gi~~~~~~t~Gs~~N~~~l~~g~~d   73 (314)
T 1us5_A            1 MRKPILAALTL-------AGLGLAQEFITIGSGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFE   73 (314)
T ss_dssp             -----------------------CCEEEEEECCCTTSSHHHHHHHHHHHHHHHTSSEEEEEECCSCHHHHHHHHHTTSCS
T ss_pred             CCHHHHHHHHH-------HCHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCC
T ss_conf             93899999997-------24342331489997999971499999999999735898489998078889999999769971


Q ss_pred             EEEEC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCE-EE
Q ss_conf             57504-22332343310000123422234720001222223443450588873344013445578888408667685-99
Q gi|254780563|r   76 VIITK-DETSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKR-LS  153 (195)
Q Consensus        76 ~~~~~-d~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~-i~  153 (195)
                      .-+.. +........+-..+.+.....+    ++.-    ......+.-+++-.     +.-.+++.||     +|| +.
T Consensus        74 ~a~~~~~~~~~~~~~~g~~~~~~~~~~~----lr~v----~~~~~~~~~~~v~~-----ds~I~s~~DL-----~Gkrv~  135 (314)
T 1us5_A           74 MALAQNDIAYYAYQGCCIPAFEGKPVKT----IRAL----AALYPEVVHVVARK-----DAGIRTVADL-----KGKRVV  135 (314)
T ss_dssp             EEEEEHHHHHHHHHTCSSTTTTTCCCTT----EEEE----EEEEEEEEEEEEET-----TSSCSSGGGG-----TTSEEE
T ss_pred             EEEECHHHHHHHHHCCCCCCCCCCCCCC----EEEE----EEECHHHHEEEECC-----CCCCCCHHHH-----CCCEEE
T ss_conf             9997508999998466875334575404----0278----87051133133037-----7776778880-----887751


Q ss_pred             ECCCCCCHHHHHHHHHHHHCH
Q ss_conf             628983049999999996086
Q gi|254780563|r  154 IAPNNISFHRLLNTMEQTPNK  174 (195)
Q Consensus       154 ~~~~~~s~~~~~~a~~~~~G~  174 (195)
                      +-+.++........++...|.
T Consensus       136 ~g~~gs~~~~~~~~~l~~~g~  156 (314)
T 1us5_A          136 VGDVGSGTEQNARQILEAYGL  156 (314)
T ss_dssp             CCCTTCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHCC
T ss_conf             368885136689999998099