HHsearch results for GI: 254780563 and protein with PDBid: 1y9u_A

>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A
Probab=99.82  E-value=7.2e-20  Score=131.81  Aligned_cols=158  Identities=16%  Similarity=0.296  Sum_probs=110.4

Q ss_pred             CCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH--HHHHH-HHCCCCCEEEECCHHHHH-HHHH-HHCCCCC
Q ss_conf             44588089981899899999999999875986210000135--66765-210666557504223323-4331-0000123
Q gi|254780563|r   23 ENTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSI--QRPPI-TQGSPVDVIITKDETSLA-LNED-LLHKLPA   97 (195)
Q Consensus        23 ~~~~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~--~~~~~-~~~~~~d~~~~~d~~~l~-~~~~-~l~~~~~   97 (195)
                      ++.++||||||+++++++++++++|||+|||+|+++.+++.  +++.+ ..+.++||+++.+..... ...+ .+.....
T Consensus         2 ~~~a~el~vYs~~~~~~~~~li~~Fek~tGIkV~~~~~~~~~~~kl~ae~~~~~~DV~~~~~~~~~~~~~~~~~~~~~~~   81 (323)
T 1y9u_A            2 SHMSDEVSLYTTREPKLIQPLLDAFAKDSGIKVNTVFVKDGLLERVRAEGDKSPADVLMTVDIGNLIDLVNGGVTQKIQS   81 (323)
T ss_dssp             ----CEEEEEESSCGGGTHHHHHHHHHHHCCEEEEEECSSCHHHHHHHHGGGCCCCEEEEESHHHHHHHHHTTCEECCCC
T ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCC
T ss_conf             65578369997988768999999999866987999979889999999745899987899786789999886045311242


Q ss_pred             CCCC-CCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCCHHH--HHHHHHHHHCH
Q ss_conf             4222-34720001222223443450588873344013445578888408667685996289830499--99999996086
Q gi|254780563|r   98 HLIK-KNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHR--LLNTMEQTPNK  174 (195)
Q Consensus        98 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s~~~--~~~a~~~~~G~  174 (195)
                      .... ..+...++...++.++.....++.||++..   ..|++|.||++|+|+|++.+..+..+...  ++..+....|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~s~~dl~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  158 (323)
T 1y9u_A           82 QTLDSVVPANLRGAEGSWYALSLRDRVLYVEKDLK---LDSFRYGDLADPKWKGKVCIRSGQHPYNTALVAAMIAHDGAE  158 (323)
T ss_dssp             HHHHHHSCGGGBCGGGSCEEEEEEEEEEEEETTCC---CCCCBGGGGGCGGGTTCEECCCTTSHHHHHHHHHHHHHHCHH
T ss_pred             CCCCCCCCHHHCCCCCCCCCCCEEEEEEEECCCCC---CCCCCHHCCCCHHHCCCEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             34233441221245653333210234564124557---898741011497775865204677734899999999763150


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q gi|254780563|r  175 TVVQDFIKN  183 (195)
Q Consensus       175 ~~~~~~l~~  183 (195)
                      .....+...
T Consensus       159 ~~~~~~~~~  167 (323)
T 1y9u_A          159 ATEKWLRGV  167 (323)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             056788877