HHsearch results for GI: 254780563 and protein with PDBid: 2nvu_B
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=99.02 E-value=2.6e-09 Score=71.59 Aligned_cols=167 Identities=14% Similarity=0.145 Sum_probs=100.6
Q ss_pred CCCCCCEEEECCCC--HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHCCCCCEEEECCH-HHHHHHHHHHCCCC
Q ss_conf 44588089981899--8999999999998759862100001356676---521066655750422-33234331000012
Q gi|254780563|r 23 ENTTKYLTLYTDQN--QSVMLPIIHSFEERTGVKISPIYTSSIQRPP---ITQGSPVDVIITKDE-TSLALNEDLLHKLP 96 (195)
Q Consensus 23 ~~~~~~lvVYs~~~--~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~---~~~~~~~d~~~~~d~-~~l~~~~~~l~~~~ 96 (195)
+..+++|+|+.+.+ .+.+++++++||+++||+|+++..+.....+ ...++..|+++.... ...+...|++.+++
T Consensus 5 k~eeg~ltvW~~~~~~~~~~~~~~~~Fe~~tgIkV~~~~~~d~~~kl~~~~asG~~PDvi~~~~~~~~~~~~~G~l~~L~ 84 (805)
T 2nvu_B 5 KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEIT 84 (805)
T ss_dssp CCCTTSEEEECCTTSCSHHHHHHHHHHHHHHSCCEEEECCTTHHHHHHHHHHSSCSCSEEEEEHHHHHHHHHTTCBCCCC
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCEEECC
T ss_conf 88888799996698338999999999853609589998389899999999866998869999979999999887986799
Q ss_pred CCCC--CCCCCCCC---CCCCCC--CCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCH----HHCCEEEECCCCCCHHHHH
Q ss_conf 3422--23472000---122222--34434505888733440134455788884086----6768599628983049999
Q gi|254780563|r 97 AHLI--KKNSFVLK---NENKKL--MRISFDTQVLAYSTKRIKIADLPKSVFDLTNA----QWKKRLSIAPNNISFHRLL 165 (195)
Q Consensus 97 ~~~~--~~~~~~~~---~~~~~~--~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p----~~kG~i~~~~~~~s~~~~~ 165 (195)
.... +...+... ..+|.. +|+...+.++.||++.+. ++|+||+||.+- +-+|+..+.-+........
T Consensus 85 ~~~~~~~~~~~~~~~~~~~dGk~ygvP~~~~~~~l~Ynkdl~~--eaP~Twdel~~~ak~l~~~g~~~~~~~~~~~~~~~ 162 (805)
T 2nvu_B 85 PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTW 162 (805)
T ss_dssp CCHHHHTSBCTTHHHHTEETTEECEEEEEEEECEEEECTTTCS--SCCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHH
T ss_pred CCHHHHHHCCHHHHHHCEECCEEEEEEEECCEEEEEEEHHHHC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
T ss_conf 4754365578988974589998999998753679999908834--89999999999999998669863896168628999
Q ss_pred HHHHHHHC---------------------HHHHHHHHHHHHHCCCCC
Q ss_conf 99999608---------------------699999999986088705
Q gi|254780563|r 166 NTMEQTPN---------------------KTVVQDFIKNITANEILT 191 (195)
Q Consensus 166 ~a~~~~~G---------------------~~~~~~~l~~l~~N~~~~ 191 (195)
..+.+..| ...+.+|++.|..++...
T Consensus 163 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 209 (805)
T 2nvu_B 163 PLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMN 209 (805)
T ss_dssp HHHHHTTCEEEEECSSSEEEEEEETSSHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 99998477402445443444433458888999999999999759988