HHsearch results for GI: 254780563 and protein with PDBid: 3mq9_A
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=99.13 E-value=5.5e-10 Score=75.42 Aligned_cols=170 Identities=14% Similarity=0.126 Sum_probs=103.6
Q ss_pred HCCCCCCCCEEEECC--CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHCCCCCEEEEC-CHHHHHHHHHHHC
Q ss_conf 124445880899818--998999999999998759862100001356676---5210666557504-2233234331000
Q gi|254780563|r 20 FSTENTTKYLTLYTD--QNQSVMLPIIHSFEERTGVKISPIYTSSIQRPP---ITQGSPVDVIITK-DETSLALNEDLLH 93 (195)
Q Consensus 20 ~~~~~~~~~lvVYs~--~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~---~~~~~~~d~~~~~-d~~~l~~~~~~l~ 93 (195)
.+.+.++++|+|+.. ...+.+++++++||+++||+|++...+.....+ ...+...|+++.. +........|++.
T Consensus 12 ~~~~~~~g~ltiW~~~~~~~~~~~e~~~~Fe~~~gIkV~i~~~~~~~~kl~t~~~sG~~PDV~~~~~~~~~~~~~~G~l~ 91 (471)
T 3mq9_A 12 TSMKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLA 91 (471)
T ss_dssp ------CCSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTTCSCSEEEEETTHHHHHHHTTCBC
T ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCC
T ss_conf 76777685799996798337999999999601639579998588899999999866999869998917899999879923
Q ss_pred CCCCCCC--CCCCCCCCC---CCC--CCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCC----HHHCCEEEECCCCCCHH
Q ss_conf 0123422--234720001---222--223443450588873344013445578888408----66768599628983049
Q gi|254780563|r 94 KLPAHLI--KKNSFVLKN---ENK--KLMRISFDTQVLAYSTKRIKIADLPKSVFDLTN----AQWKKRLSIAPNNISFH 162 (195)
Q Consensus 94 ~~~~~~~--~~~~~~~~~---~~~--~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~----p~~kG~i~~~~~~~s~~ 162 (195)
++..... +...+...+ .+| +.+|......++.||++.++ ++|++|+||.+ ...+|...+.-......
T Consensus 92 ~L~~~~~~~d~~~~~~~~~~~~dGk~Y~iP~~~~~~~l~YNkd~~~--e~P~Twddl~~~a~~~~~~~~~~~~~~~~~~~ 169 (471)
T 3mq9_A 92 EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--NPPKTWEEIPALDKELKAKGKSALMFNLQEPY 169 (471)
T ss_dssp CCCCCHHHHTTBCHHHHGGGEETTEECEEEEEEEECEEEEETTTCS--SCCSBGGGHHHHHHHHHTTTCEEECCCCSSHH
T ss_pred CCCCCHHHHHHCCHHHHHHCEECCEEEECCEEECCEEEEEECCCCC--CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 1893654475458888974469999971673513336898254444--79702578999998767407886435777631
Q ss_pred HHHHHHHHHH-C---------------------HHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999960-8---------------------6999999999860887056
Q gi|254780563|r 163 RLLNTMEQTP-N---------------------KTVVQDFIKNITANEILTK 192 (195)
Q Consensus 163 ~~~~a~~~~~-G---------------------~~~~~~~l~~l~~N~~~~~ 192 (195)
.+ ..++... | ...+.+|++.|..++...+
T Consensus 170 ~~-~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~eal~~l~~l~~~g~~~~ 220 (471)
T 3mq9_A 170 FT-WPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNA 220 (471)
T ss_dssp HH-HHHHGGGTCEEEEECSSCEEEEEEESSSHHHHHHHHHHHHHHHTTSSCT
T ss_pred HH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 15-9999972784002345776544345577889999999999997489885