HHsearch results for GI: 254780563 and protein with PDBid: 3muq_A

>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=99.03  E-value=4.1e-10  Score=76.13  Aligned_cols=133  Identities=16%  Similarity=0.100  Sum_probs=83.3

Q ss_pred             CCCCCEEEECC--CCH-HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHH--HHHHHCCCCCC
Q ss_conf             45880899818--998-99999999999875986210000135667652106665575042233234--33100001234
Q gi|254780563|r   24 NTTKYLTLYTD--QNQ-SVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITKDETSLAL--NEDLLHKLPAH   98 (195)
Q Consensus        24 ~~~~~lvVYs~--~~~-~~~~~~~~~Fek~tgIkV~~~~~~~~~~~~~~~~~~~d~~~~~d~~~l~~--~~~~l~~~~~~   98 (195)
                      +.++.++|++.  ..+ .+++++.++|||+|||+|+++.+++.+.+.+.++.++|++++.+......  +.+.+.+..  
T Consensus         2 ~~a~~~~~~~~~S~~~sgl~~~l~~~Fek~tGi~V~~~~g~sg~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--   79 (237)
T 3muq_A            2 NAAEHVRLATTTSTYHSGLLDYLLPQFEKDTGYKVDVIAAGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPR--   79 (237)
T ss_dssp             ---CEEEEEEEHHHHHHTHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEE--
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCC--
T ss_conf             978727999975874022799999999998598799997784999999866898758851717789887547765552--


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCCHHH--HHHHHHHHHCH
Q ss_conf             22234720001222223443450588873344013445578888408667685996289830499--99999996086
Q gi|254780563|r   99 LIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHR--LLNTMEQTPNK  174 (195)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s~~~--~~~a~~~~~G~  174 (195)
                                      ..............+.......+..|.++.++.++++++++++.+++..  ....+....++
T Consensus        80 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  141 (237)
T 3muq_A           80 ----------------KLMYNDFVIVGPKADPAKIKDDESVLDVFKEIANKNATFISRGDDSGTHKKEMGFWAQTKIE  141 (237)
T ss_dssp             ----------------EEEEEEEEEEECTTCTTCCTTCSSHHHHHHHHHHTTCCEEECCSCCHHHHHHHHHHHHHTCC
T ss_pred             ----------------EEEEEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf             ----------------34541002787614631123451256665411245427987776637899999999872565