HHSEARCH alignment of GI: 254780563 and SCOP domain: d1a99a_

Alignment
>d1a99a_ c.94.1.1 (A:) Putrescine receptor (PotF) {Escherichia coli [TaxId: 562]}
Probab=99.20  E-value=7.1e-12  Score=84.83  Aligned_cols=162  Identities=15%  Similarity=0.158  Sum_probs=100.5

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH---HHHHHHCCCCCEEEECCH-HHHHHHHHHHCCCCCCCCC
Q ss_conf             880899818998999999999998759862100001356---676521066655750422-3323433100001234222
Q gi|254780563|r   26 TKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVIITKDE-TSLALNEDLLHKLPAHLIK  101 (195)
Q Consensus        26 ~~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~---~~~~~~~~~~d~~~~~d~-~~l~~~~~~l~~~~~~~~~  101 (195)
                      +++|+||++.++ ..+.++++||++|||+|+++..+..+   .++...++..|+++.... .....+.|+++++......
T Consensus         1 ~ktL~v~~W~~y-~~~~li~~Fek~tgI~V~~~~~~~~~~~~~~l~ag~~~~Dv~~~~~~~~~~~~~~g~l~~l~~~~~~   79 (341)
T d1a99a_           1 QKTLHIYNWSDY-IAPDTVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKLP   79 (341)
T ss_dssp             CCEEEEEEETTC-SCTTHHHHHHHHHCCEEEEEEESCHHHHHHHHHHCCCCCSEECCBHHHHHHHHHTTCBCCCCGGGCG
T ss_pred             CCEEEEEECCCC-CCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHCCCCCCCCHHCCC
T ss_conf             978999956875-7989999999985997999958999999999982899995999887999999976983312300032


Q ss_pred             CC---CCCC-------CCCCCCCCCCCCCEEEEEEEHHHHCCC----CCCCCHHHHCCHHHCCEEEECCC--CCCHHHHH
Q ss_conf             34---7200-------012222234434505888733440134----45578888408667685996289--83049999
Q gi|254780563|r  102 KN---SFVL-------KNENKKLMRISFDTQVLAYSTKRIKIA----DLPKSVFDLTNAQWKKRLSIAPN--NISFHRLL  165 (195)
Q Consensus       102 ~~---~~~~-------~~~~~~~~~~~~~~~~~~~n~~~~~~~----~~P~sw~DL~~p~~kG~i~~~~~--~~s~~~~~  165 (195)
                      ..   .+.+       .+...+..++.....++.||++.++..    .+|++|.||++++++++......  ......++
T Consensus        80 ~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~yn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (341)
T d1a99a_          80 EWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVF  159 (341)
T ss_dssp             GGGGBCHHHHHHHHTTSGGGCSEEEEEEEEEEEEEEHHHHHHHHCTTCCTTSTHHHHSHHHHHHHGGGCEEECSCHHHHH
T ss_pred             CCHHCCHHHHHCCCCCCCCCEEEEEEECCCCEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf             30004766640110012697257543214300100155540156886410126899877664103567743221289999


Q ss_pred             HHHHHHHCHH-----------HHHHHHHHHHHCC
Q ss_conf             9999960869-----------9999999986088
Q gi|254780563|r  166 NTMEQTPNKT-----------VVQDFIKNITANE  188 (195)
Q Consensus       166 ~a~~~~~G~~-----------~~~~~l~~l~~N~  188 (195)
                      .......|.+           .+.+.+..++.|.
T Consensus       160 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (341)
T d1a99a_         160 ATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNI  193 (341)
T ss_dssp             HHHHHHTTSCTTCCCHHHHHTHHHHHHHHHGGGC
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             9999975988655440467788999887535562


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Putrescine receptor (PotF)
species: Escherichia coli [TaxId: 562]