HHSEARCH alignment of GI: 254780563 and SCOP domain: d1twya_

Alignment
>d1twya_ c.94.1.1 (A:) ABC transporter, periplasmic substrate-binding protein VCA0807 {Vibrio cholerae [TaxId: 666]}
Probab=97.31  E-value=0.0008  Score=38.92  Aligned_cols=122  Identities=7%  Similarity=0.058  Sum_probs=74.0

Q ss_pred             CEEEECCCC-HHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             089981899-899999999999875-986210000135667652106665575042233234331000012342223472
Q gi|254780563|r   28 YLTLYTDQN-QSVMLPIIHSFEERT-GVKISPIYTSSIQRPPITQGSPVDVIITKDETSLALNEDLLHKLPAHLIKKNSF  105 (195)
Q Consensus        28 ~lvVYs~~~-~~~~~~~~~~Fek~t-gIkV~~~~~~~~~~~~~~~~~~~d~~~~~d~~~l~~~~~~l~~~~~~~~~~~~~  105 (195)
                      +|+|-.+.+ ..+++.+.++|++++ |++|++...++.+.+....+..+|+.+.......  ++                
T Consensus         2 ~i~i~GS~s~~~~~~~l~~~f~~~~p~~~v~v~~~gS~~~~~~l~~g~~di~~~s~~~~~--~e----------------   63 (249)
T d1twya_           2 EITISGSTSVARIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTE--SE----------------   63 (249)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHTTSCSEEEESSCCCT--TT----------------
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCEEEECCCCHHH--HH----------------
T ss_conf             699995160999999999999988879379997078579999997599725523421234--54----------------


Q ss_pred             CCCCCCCCCCCCCCCEEEEEEEHHHHCC-----------CCCCCCHHHHCCHHHCCEEEECCCCCCHHHHHHHHH
Q ss_conf             0001222223443450588873344013-----------445578888408667685996289830499999999
Q gi|254780563|r  106 VLKNENKKLMRISFDTQVLAYSTKRIKI-----------ADLPKSVFDLTNAQWKKRLSIAPNNISFHRLLNTME  169 (195)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~-----------~~~P~sw~DL~~p~~kG~i~~~~~~~s~~~~~~a~~  169 (195)
                        ....-...++.....++++|.+--..           ...+++|.|+..|..+..+..++.++..+..+..++
T Consensus        64 --~~~~~~~~~ia~d~lviiv~~~np~~~lt~~ql~~I~~g~i~~W~~~~~~~~~i~~~~r~~~Sgt~~~f~~~~  136 (249)
T d1twya_          64 --AQNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLM  136 (249)
T ss_dssp             --CCTTCEEEEEEEEEEEEEECTTCCCCEECHHHHHHHHHTSCCBGGGGTSCSCBCEEEEECTTCHHHHHHHHHH
T ss_pred             --HHCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCEECCCCCCHHHHHHHHHH
T ss_conf             --2200245788850301223643111225577887645420021233212234442002788830899999997


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: ABC transporter, periplasmic substrate-binding protein VCA0807
species: Vibrio cholerae [TaxId: 666]