HHSEARCH alignment of GI: 254780563 and SCOP domain: d1y4ta_

Alignment

Probab=99.91  E-value=1e-23  Score=152.43  Aligned_cols=165  Identities=21%  Similarity=0.310  Sum_probs=133.6

Q ss_pred             CCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH----HHHHCCCCCEEEECCHHHHH--HHHHHHCCCCCCCC
Q ss_conf             8089981899899999999999875986210000135667----65210666557504223323--43310000123422
Q gi|254780563|r   27 KYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRP----PITQGSPVDVIITKDETSLA--LNEDLLHKLPAHLI  100 (195)
Q Consensus        27 ~~lvVYs~~~~~~~~~~~~~Fek~tgIkV~~~~~~~~~~~----~~~~~~~~d~~~~~d~~~l~--~~~~~l~~~~~~~~  100 (195)
                      .||+|||+++++..++++++|||+|||+|+++..++.+.+    .++.+.++|++++.+...+.  ...+.+.+++....
T Consensus         1 ~ev~iy~~~~~~~~~~i~~~Fek~tGIkV~~~~~~~~~~~~kl~ae~~~~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (317)
T d1y4ta_           1 SELNIYSARHYNADFEIIKKFEEKTGIKVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYL   80 (317)
T ss_dssp             CCEEEEECCCCTHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHGGGCCCCEEEESSHHHHHHHHHTTCEECCCCHHH
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCH
T ss_conf             93899848984507999999999869889999798299999999748999970999687899999876310354332102


Q ss_pred             CC-CCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCHHHHCCHHHCCEEEECCCCCC-HHHHHHHHHHHHCHHHHH
Q ss_conf             23-4720001222223443450588873344013445578888408667685996289830-499999999960869999
Q gi|254780563|r  101 KK-NSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNIS-FHRLLNTMEQTPNKTVVQ  178 (195)
Q Consensus       101 ~~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~P~sw~DL~~p~~kG~i~~~~~~~s-~~~~~~a~~~~~G~~~~~  178 (195)
                      .. .+...++..++++++.....+++||++..+..++|+||+||++|+++|++.+.+.+++ +..++.++....|++...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~yn~~~~~~~~~p~tw~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  160 (317)
T d1y4ta_          81 EEFIPAHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKNYEDLAKAEFKGEIVMRSATAPYSKTLLASIIANDGNKEAK  160 (317)
T ss_dssp             HHHSCGGGBCTTSSCEEEEEEEEEEEEETTSCCCCTTCCSGGGGGCGGGTTCEECCCTTSHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf             32031665411235555432344432333321246688887885030004724430244026778888888602872068


Q ss_pred             HHHHHHHHCCCCC
Q ss_conf             9999986088705
Q gi|254780563|r  179 DFIKNITANEILT  191 (195)
Q Consensus       179 ~~l~~l~~N~~~~  191 (195)
                      ++.+.+..|....
T Consensus       161 ~~~~~~~~~~~~~  173 (317)
T d1y4ta_         161 AWAKGVLENLATN  173 (317)
T ss_dssp             HHHHHHHHHBSSS
T ss_pred             HHHHHHHHHCCCC
T ss_conf             9999887530335

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Ferric-binding protein FbpA
species: Campylobacter jejuni [TaxId: 197]