RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780563|ref|YP_003064976.1| extracellular solute-binding
protein [Candidatus Liberibacter asiaticus str. psy62]
(195 letters)
>1xvx_A YFUA; periplasmic iron binding protein; 1.53A {Yersinia
enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
Length = 312
Score = 66.6 bits (161), Expect = 3e-12
Identities = 37/171 (21%), Positives = 83/171 (48%), Gaps = 6/171 (3%)
Query: 23 ENTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQG--SPVDVII 78
E+ + +Y Q+++++ + F + TG+K++ + + +G SP DV +
Sbjct: 1 ESNDSGIVVYNAQHENLVKSWVDGFTKDTGIKVTLRNGGDSELGNQLVQEGSASPADVFL 60
Query: 79 TKDETSL--ALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADL 136
T++ ++ N L L A + + + E+ + I+ + V Y+ ++I A+L
Sbjct: 61 TENSPAMVLVDNAKLFAPLDAVTQAQVAQEYRPEHGRWTGIAARSTVFVYNPEKISEAEL 120
Query: 137 PKSVFDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDFIKNITAN 187
PKS+ DL +WK R + +P+ F +++ M + + +++K + N
Sbjct: 121 PKSIMDLAKPEWKGRWAASPSGADFQAIVSAMLELKGEKATLEWLKAMKTN 171
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding
protein; beta sheet surrounded by alpha helices; 1.60A
{Campylobacter jejuni} PDB: 1y4t_A
Length = 322
Score = 56.5 bits (135), Expect = 4e-09
Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 29 LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRPP----ITQGSPVDVIITKDETS 84
L +Y+ ++ + II FEE+TG+K++ + + SP D+ IT D ++
Sbjct: 4 LNIYSARHYNADFEIIKKFEEKTGIKVNHTQAKASELIKRLSLEGSNSPADIFITADISN 63
Query: 85 L--ALNEDLLHKL-PAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVF 141
L A N LL + +L + L++++K+ I+ +++AY+ K+
Sbjct: 64 LTEAKNLGLLSPVSSKYLEEFIPAHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKNYE 123
Query: 142 DLTNAQWKKRLSIAPNNISFHRLLNTM 168
DL A++K + + + + L
Sbjct: 124 DLAKAEFKGEIVMRSATAPYSKTLLAS 150
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia
haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A
Length = 320
Score = 55.0 bits (131), Expect = 1e-08
Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 7/166 (4%)
Query: 29 LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQG-SPVDVIITKDETSL 85
+ +Y+ + ++ P++ +FE+ TG+K++ I+ + R SP DV++T D + +
Sbjct: 4 VNVYSYRQPYLIEPMLKNFEKDTGIKVNIIFADKGLVDRVKQEGELSPADVLLTVDISRV 63
Query: 86 ALNED---LLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFD 142
+ L K ++ N + ++ +V+ S R+ D
Sbjct: 64 MEIVNADLAQKIDSKVLEKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYLD 123
Query: 143 LTNAQWKKRLSIAP-NNISFHRLLNTMEQTPNKTVVQDFIKNITAN 187
L ++K ++ + N L M + + F++ + AN
Sbjct: 124 LAKPEYKGKVCVRSGKNSYNVSLFAAMIEHYGIEKTKAFLEGLKAN 169
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein,
EDTA-Fe-protein complex, metal binding protein; HET:
EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB:
1mrp_A 1d9v_A 1qvs_A 2o6a_A 2o68_A 2o69_A 1qw0_A 1o7t_A*
1xc1_A* 1r1n_A* 1d9y_A
Length = 309
Score = 54.7 bits (130), Expect = 1e-08
Identities = 33/167 (19%), Positives = 70/167 (41%), Gaps = 8/167 (4%)
Query: 29 LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQG--SPVDVIITKDETS 84
+T+Y Q + + +FE+ TG+K++ S + +G +P DV T+ +
Sbjct: 2 ITVYNGQQKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTAT 61
Query: 85 L--ALNEDLLHKLPAHLIKK--NSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSV 140
LL + I++ V K + +S ++V+ Y ++ D+ KSV
Sbjct: 62 FADLSEAGLLAPISEQTIQQTAQKGVPLAPKKDWIALSGRSRVVVYDHTKLSEKDMEKSV 121
Query: 141 FDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDFIKNITAN 187
D +WK ++ + +F + + + V +++K + N
Sbjct: 122 LDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALNWLKGLKEN 168
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron
tyrosinate interaction, metal binding protein; 1.39A
{Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB:
2ows_A 2owt_A
Length = 323
Score = 46.0 bits (107), Expect = 6e-06
Identities = 22/143 (15%), Positives = 52/143 (36%), Gaps = 3/143 (2%)
Query: 29 LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS--IQRPPITQGSP-VDVIITKDETSL 85
++LYT + ++ P++ +F + +G+K++ ++ ++R DV++T D +L
Sbjct: 8 VSLYTTREPKLIQPLLDAFAKDSGIKVNTVFVKDGLLERVRAEGDKSPADVLMTVDIGNL 67
Query: 86 ALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTN 145
+ +S V N + + DL +
Sbjct: 68 IDLVNGGVTQKIQSQTLDSVVPANLRGAEGSWYALSLRDRVLYVEKDLKLDSFRYGDLAD 127
Query: 146 AQWKKRLSIAPNNISFHRLLNTM 168
+WK ++ I ++ L
Sbjct: 128 PKWKGKVCIRSGQHPYNTALVAA 150
>2pt1_A Iron transport protein; C-clamp, iron-binding protein,
solute-binding protein, periplasmic binding protein, ABC
transporter, metal transport; 2.00A {Synechocystis SP}
PDB: 2pt2_A 3f11_A
Length = 334
Score = 43.1 bits (100), Expect = 4e-05
Identities = 28/167 (16%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 29 LTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSS---IQRPPITQGSP-VDVIITKDETS 84
+ LY+ ++ + + F TG+K++ I + ++R + DV++T D
Sbjct: 21 INLYSSRHYNTDNELYAKFTAETGIKVNLIEGKADELLERIKSEGANSPADVLLTVDLAR 80
Query: 85 LALNEDLLHKLPAHLIKKNSFV---LKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVF 141
L E+ P + V L++ + + +V+ Y+ ++K + +
Sbjct: 81 LWRAEEDGIFQPVQSEILETNVPEYLRSPDGMWFGFTKRARVIMYNKGKVKPEE-LSTYE 139
Query: 142 DLTNAQWKKRLSIAPNNISF-HRLLNTMEQTPNKTVVQDFIKNITAN 187
+L + +WK R+ I ++ + L+ ++ + + K +N
Sbjct: 140 ELADPKWKGRVIIRSSSNEYNQSLVASLVVADGEESTLAWAKGFVSN 186
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein,
sugar binding protein, virulence, alpha-glucan, sugar
transport; HET: GLC; 2.00A {Streptococcus pneumoniae}
PDB: 2xd2_A*
Length = 416
Score = 42.9 bits (100), Expect = 5e-05
Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 20/166 (12%)
Query: 11 LLLCGFTEAFST-----ENTTKYLTLYTDQNQS-VMLPIIHSFEERTGVKISPIYTSSIQ 64
L+ G A + K LT+Y D+ + + ++E+ GVK++ ++
Sbjct: 14 LVPRGSHMASDKPADSGSSEVKELTVYVDEGYKSYIEEVAKAYEKEAGVKVTLKTGDALG 73
Query: 65 RPP-----ITQGSPVDVIITK-DETSLALNEDLLHKLPAHLIKKNSFVLKNE----NKKL 114
G+ DV++ D ++ L ++ K K+ N K+
Sbjct: 74 GLDKLSLDNQNGNVPDVMMAPYDRVGSLGSDGQLSEVKLSDGAKTDDTTKSLVTAANGKV 133
Query: 115 MRI--SFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNN 158
++ V+ Y+ +K A PK+ DL N + + A +
Sbjct: 134 YGAPAVIESLVMYYNKDLVKDA--PKTFADLENLAKDSKYAFAGED 177
>3h3g_A Fusion protein of maltose-binding periplasmic domain and human
parathyroid hormone...; GPCR, extracellular domain,
PTHRP, PTH, PThr1, periplasm, sugar transport,
transport, membrane protein; HET: MAL; 1.94A
{Escherichia coli} PDB: 3c4m_A* 3l2j_A* 3ehs_A* 3ehu_A*
3eht_A*
Length = 539
Score = 39.1 bits (90), Expect = 7e-04
Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 15/134 (11%)
Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
L ++ D+ + + + FE+ TG+K++ + ++ G D+I D
Sbjct: 9 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 68
Query: 83 TSLALNEDLLHKLPAHLIKKNSFV-----LKNENKKLMRI--SFDTQVLAYSTKRIKIAD 135
LL ++ ++ N KL+ + + L Y+ +
Sbjct: 69 FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNP- 127
Query: 136 LPKSVFDLTNAQWK 149
PK+ ++ +
Sbjct: 128 -PKTWEEIPALDKE 140
>3iot_A Maltose-binding protein, huntingtin fusion protein; HTT-EX1, HD,
sugar transport, transport, apoptosis, cytoplasm,
disease mutation; 3.50A {Escherichia coli k-12} PDB:
3ior_A 3iou_A 3iov_A 3iow_A
Length = 449
Score = 37.7 bits (86), Expect = 0.002
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
L ++ D+ + + + FE+ TG+K++ + ++ G D+I D
Sbjct: 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66
Query: 83 TSLALNEDLLHKLPAHLIKKNSFV 106
LL ++ ++
Sbjct: 67 FGGYAQSGLLAEITPDKAFQDKLY 90
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 37.1 bits (85), Expect = 0.003
Identities = 19/141 (13%), Positives = 50/141 (35%), Gaps = 17/141 (12%)
Query: 22 TENTTKYLTLYTDQNQS--VMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDV 76
E L ++ + ++ + + FE+ TG+K++ + ++ G D+
Sbjct: 2 IEEGK--LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDI 59
Query: 77 I-ITKDETSLALNEDLLHKLPAHLIKKNSFV------LKNENKKL-MRISFDTQVLAYST 128
I D LL ++ ++ ++ K + I+ + L Y+
Sbjct: 60 IFWAHDRFGGYAQSGLLAEITPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNK 119
Query: 129 KRIKIADLPKSVFDLTNAQWK 149
+ + PK+ ++ +
Sbjct: 120 D--LLPNPPKTWEEIPALDKE 138
>1y4c_A Maltose binding protein fused with designed helical protein; de
novo designed helical protein, maltose binding protein
fusion, de novo protein; HET: GLC; 1.90A {Escherichia
coli}
Length = 494
Score = 36.9 bits (84), Expect = 0.003
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
L ++ D+ + + + FE+ TG+K++ + ++ G D+I D
Sbjct: 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66
Query: 83 TSLALNEDLLHKLPAHLIKKNSFV 106
LL ++ ++
Sbjct: 67 FGGYAQSGLLAEITPDKAFQDKLY 90
>3c9h_A ABC transporter, substrate binding protein; structural genomics,
MCSG, PSI-2, protein structure initiative; HET: CIT;
1.90A {Agrobacterium tumefaciens str}
Length = 355
Score = 36.7 bits (83), Expect = 0.003
Identities = 16/180 (8%), Positives = 52/180 (28%), Gaps = 8/180 (4%)
Query: 11 LLLCGFTEAFSTENTTKYLTLYTDQNQSVMLPIIHSFEERT-GVKISPIYTSS------- 62
L A S + + L +Y+ ++ + P+I F++ + + +
Sbjct: 18 LAQVAVFPALSGKTDAQTLVVYSSLDEPLATPMIEGFQKANPDIAVHYEDMLTGEIYDRI 77
Query: 63 IQRPPITQGSPVDVIITKDETSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQ 122
++ + + + + + L+ D + + N ++F+
Sbjct: 78 VKETDAGKKTADFAFSSAMDLQVKLSNDGYAQRSDLAMSARWPAWANWRNTAYALTFEPA 137
Query: 123 VLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNKTVVQDFIK 182
V Y P + + + + + ++ + + + F
Sbjct: 138 VFVYHKPSFTTEKPPATRAEFVDYLERHAKEVHGRIATYDIERSGVGFLFMSRDQEQFGD 197
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate
2-O-sulfotransferase 1; maltose binding protein, fusion,
heparan sulfate biosynthesis; HET: GLC A3P; 2.65A
{Escherichia coli k-12}
Length = 658
Score = 36.3 bits (83), Expect = 0.004
Identities = 20/136 (14%), Positives = 48/136 (35%), Gaps = 15/136 (11%)
Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
L ++ D+ + + + FE+ TG+K++ + ++ G D+I D
Sbjct: 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66
Query: 83 TSLALNEDLLHKLPAHLIKKNSF-------VLKNENKKLMRISFDTQVLAYSTKRIKIAD 135
LL ++ ++ V N I+ + L Y+ + +
Sbjct: 67 FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--N 124
Query: 136 LPKSVFDLTNAQWKKR 151
PK+ ++ + +
Sbjct: 125 PPKTWEEIPALDKELK 140
>1mg1_A Protein (HTLV-1 GP21 ectodomain/maltose-binding protein chimera);
human T cell leukemia virus type 1, envelope protein;
HET: MAL; 2.50A {Human t-lymphotropic virus 1} SCOP:
c.94.1.1 h.3.2.1
Length = 450
Score = 36.4 bits (83), Expect = 0.004
Identities = 18/135 (13%), Positives = 45/135 (33%), Gaps = 13/135 (9%)
Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
L ++ D+ + + + FE+ TG+K++ + ++ G D+I D
Sbjct: 3 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 62
Query: 83 TSLALNEDLLHKLPAHLIKKNSFV------LKNENKKLMR-ISFDTQVLAYSTKRIKIAD 135
LL ++ ++ ++ K + I+ + L Y+ +
Sbjct: 63 FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPP 122
Query: 136 LPKSVFDLTNAQWKK 150
+ + K
Sbjct: 123 KTWEEIPALDKELKA 137
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein,
metal-binding protein, TAT; 1.70A {Synechocystis SP}
PDB: 2vp1_A*
Length = 346
Score = 35.1 bits (79), Expect = 0.010
Identities = 32/168 (19%), Positives = 66/168 (39%), Gaps = 10/168 (5%)
Query: 5 TIYTYLLLLCGFTEAFSTENTTKYLTLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQ 64
T T L++ A + T + LY+ ++ + + +F E ++ S I+
Sbjct: 15 TALTALVVANLPRRASAQSRT---INLYSSRHYNTDDALYDAFGEVNLIEAS--AEELIE 69
Query: 65 RPPITQGSP-VDVIITKDETSLALNEDLLHKLP---AHLIKKNSFVLKNENKKLMRISFD 120
R + D++ T D L E P L ++ L++ + +
Sbjct: 70 RIQSEGANSPGDILFTVDAGMLWRAEQAGLFQPVRSGKLNERIPENLRHPDGLWYGFTQR 129
Query: 121 TQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNISFHRLLNTM 168
+VL YS R+ AD + L + QW+ ++ + P++ ++ L
Sbjct: 130 ARVLYYSRDRVNPAD-LSTYEALADPQWRGKILVRPSSNVYNLSLTAS 176
>2zxt_A Maltose-binding periplasmic protein, linker, mitochondrial
intermembrane space import...; disulfide bond, alpha
helix, fusion, sugar transport; HET: MAL; 3.00A
{Escherichia coli}
Length = 465
Score = 35.2 bits (80), Expect = 0.010
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
L ++ D+ + + + FE+ TG+K++ + ++ G D+I D
Sbjct: 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66
Query: 83 TSLALNEDLLHKLPAHLIKKNSFV 106
LL ++ ++
Sbjct: 67 FGGYAQSGLLAEITPDKAFQDKLY 90
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 34.7 bits (79), Expect = 0.013
Identities = 19/131 (14%), Positives = 48/131 (36%), Gaps = 15/131 (11%)
Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVIITK-DE 82
L ++ D+ + + + FE+ TG+K++ + ++ G D+I D
Sbjct: 11 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 70
Query: 83 TSLALNEDLLHKLPAHLIKKNSFV------LKNENKKL-MRISFDTQVLAYSTKRIKIAD 135
LL ++ ++ ++ K + I+ + L Y+ + +
Sbjct: 71 FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP--N 128
Query: 136 LPKSVFDLTNA 146
PK+ ++
Sbjct: 129 PPKTWEEIPAL 139
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding
cooperativity, maltose binding protein, MBP, sugar
binding, DNA binding protein; 2.10A {Escherichia coli}
SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Length = 421
Score = 34.5 bits (78), Expect = 0.015
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
L ++ D+ + + + FE+ TG+K++ + ++ G D+I D
Sbjct: 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66
Query: 83 TSLALNEDLLHKLPAHLIKKNSFV 106
LL ++ ++
Sbjct: 67 FGGYAQSGLLAEITPDKAFQDKLY 90
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered
binding protein, antibody mimic, synthetic protein
interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A*
3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A* 3g7v_A*
Length = 461
Score = 34.6 bits (78), Expect = 0.017
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
L ++ D+ + + + FE+ TG+K++ + ++ G D+I D
Sbjct: 5 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 64
Query: 83 TSLALNEDLLHKLPAHLIKKNSFV 106
LL ++ ++
Sbjct: 65 FGGYAQSGLLAEITPDKAFQDKLY 88
>3kjt_A Maltose-binding periplasmic protein; alternate conformation, sugar
transport, transport, transport protein; 1.50A
{Escherichia coli k-12} PDB: 3hpi_A 1anf_A* 1dmb_A*
1ez9_A* 1jw4_A 1jw5_A* 1lls_A 1omp_A 2d21_A 2r6g_E*
3mbp_A* 4mbp_A* 1fqa_A* 1fqb_A* 1fqc_A* 1fqd_A* 1ezo_A
1ezp_A 2h25_A 2klf_A ...
Length = 372
Score = 34.3 bits (77), Expect = 0.019
Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
L ++ + + + FE+ TG+K++ + ++ G D+I D
Sbjct: 9 LVIWINGLFGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFYAHDR 68
Query: 83 TSLALNEDLLHKLPAHLIKKNSFV 106
LL ++ ++
Sbjct: 69 FGGYAQSGLLAEITPDKAFQDKLY 92
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex,
mutant K127S, metal binding protein; 1.55A {Xanthomonas
axonopodis PV} PDB: 2h5y_A
Length = 253
Score = 33.8 bits (76), Expect = 0.024
Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 15/134 (11%)
Query: 29 LTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSSIQ-RPPITQGSPVDVIITKDETSLA 86
+T++ + + M ++E+ TG + Y +S I QG+P DV ++ D +
Sbjct: 25 VTVFAAASLKESMDEAATAYEKATGTPVRVSYAASSALARQIEQGAPADVFLSADLEWM- 83
Query: 87 LNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNA 146
++++ VL + L+ + A S R+ P ++
Sbjct: 84 -----------DYLQQHGLVLPAQRHNLLGNTLVLVAPASSKLRVDPRA-PGAIAKALGE 131
Query: 147 QWKKRLSIAPNNIS 160
+ + + +
Sbjct: 132 NGRLAVGQTASVPA 145
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein;
the tungstate ABC transporter, structural genomics, PSI,
MCSG; 1.80A {Geobacter sulfurreducens}
Length = 236
Score = 33.8 bits (76), Expect = 0.030
Identities = 21/161 (13%), Positives = 45/161 (27%), Gaps = 12/161 (7%)
Query: 24 NTTKYLTLYT---DQNQSVMLPIIHSFEERTGVKISPIYTSS---IQRPPITQGSPVDVI 77
N + L + T Q+ ++ ++ FE++ VK+ I + ++ G V
Sbjct: 2 NAEERLKMSTTTSTQDSGLLKVLLPPFEKKNNVKVDVIAVGTGQALKL--GEAGDVDVVF 59
Query: 78 ITKDETSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYST----KRIKI 133
+ + D ++ + ++ +N T A I
Sbjct: 60 VHARKLEDKFVADGFGVNRKDVMYNDFVIVGPKNDPAGIAKAKTAAEALKLLATKGATFI 119
Query: 134 ADLPKSVFDLTNAQWKKRLSIAPNNISFHRLLNTMEQTPNK 174
+ KS K + P + M
Sbjct: 120 SRGDKSGTHTKELDLWKSAGVDPKGNWYVEAGQGMGPVITM 160
>2vgq_A Maltose-binding periplasmic protein, mitochondrial
antiviral-signaling protein; immune system/transport,
IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Length = 477
Score = 33.4 bits (75), Expect = 0.032
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
L ++ D+ + + + FE+ TG+K++ + ++ G D+I D
Sbjct: 22 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 81
Query: 83 TSLALNEDLLHKLPAHLIKKNSFV 106
LL ++ ++
Sbjct: 82 FGGYAQSGLLAEITPDKAFQDKLY 105
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport
protein; HET: SPD; 1.80A {Escherichia coli} SCOP:
c.94.1.1 PDB: 1poy_1*
Length = 325
Score = 33.5 bits (75), Expect = 0.033
Identities = 14/132 (10%), Positives = 40/132 (30%), Gaps = 14/132 (10%)
Query: 43 IIHSFEERTGVKISPIYTSS----IQRPPITQGSPVDVIITKDETSLALNE-DLLHKLPA 97
++ F + TG+K+ S + + D+++ + + ++ K+
Sbjct: 19 LLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDK 78
Query: 98 HLIKKNSFVLKNENKKLMR--------ISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWK 149
+ S + + K + + + + S DL ++K
Sbjct: 79 SKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKS-VTSWADLWKPEYK 137
Query: 150 KRLSIAPNNISF 161
L + +
Sbjct: 138 GSLLLTDDAREV 149
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC
transporter; 1.20A {Azotobacter vinelandii} SCOP:
c.94.1.1
Length = 231
Score = 33.1 bits (74), Expect = 0.037
Identities = 23/137 (16%), Positives = 38/137 (27%), Gaps = 21/137 (15%)
Query: 29 LTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSS-IQRPPITQGSPVDVIITKDETSLA 86
L + T N + + F ++TG + SS I G+P +V + DE
Sbjct: 2 LKVVTATNFLGTLEQLAGQFAKQTGHAVVISSGSSGPVYAQIVNGAPYNVFFSADE---- 57
Query: 87 LNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNA 146
K+ L N+ L F + K + L
Sbjct: 58 ---------------KSPEKLDNQGFALPGSRFTYAIGKLVLWSAKPGLVDNQGKVLAGN 102
Query: 147 QWKKRLSIAPNNISFHR 163
W+ P +
Sbjct: 103 GWRHIAISNPQIAPYGL 119
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein,
N-glycosylation, structural genomics; HET: FLC; 1.60A
{Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A*
3fj7_A*
Length = 237
Score = 33.0 bits (74), Expect = 0.039
Identities = 10/59 (16%), Positives = 23/59 (38%)
Query: 39 VMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITKDETSLALNEDLLHKLPA 97
+ I + + E+TGVK++ + + + D+++LA+ D
Sbjct: 14 ALKDIANKYSEKTGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNV 72
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2e5e_A
Length = 581
Score = 33.2 bits (75), Expect = 0.042
Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 13/120 (10%)
Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVIITK-DE 82
L ++ D+ + + + FE+ TG+K++ + ++ G D+I D
Sbjct: 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66
Query: 83 TSLALNEDLLHKLPAHLIKKNSFV-----LKNENKKLMRI--SFDTQVLAYSTKRIKIAD 135
LL ++ ++ N KL+ + + L Y+ +
Sbjct: 67 FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPP 126
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic
binding protein, ABC transporter, transport protein,
ligand; HET: CIT; 1.69A {Methanosarcina acetivorans}
PDB: 3k6u_A* 3k6w_A 3k6x_A
Length = 354
Score = 33.1 bits (74), Expect = 0.043
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 6/120 (5%)
Query: 21 STENTTKYLTLYTDQN-QSVMLPIIHSFEER-TGVKISPIYTSS--IQRPPITQGSPVDV 76
++ + LT++ + + FE + GV + S R G DV
Sbjct: 37 TSAGEGEVLTVFHAGSLSVPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADV 96
Query: 77 IITKDETSL--ALNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIA 134
+ + D + + + A + NE+K I+ D ++
Sbjct: 97 LASADYALIPSLMVPEYADWYAAFARNQMILAYTNESKYGDEINTDNWYEILRRPDVRYG 156
>1r6z_P Chimera of maltose-binding periplasmic protein and argonaute 2;
deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A
{Escherichia coli} SCOP: b.34.14.1 c.94.1.1 PDB: 1t2r_A
1t2s_A
Length = 509
Score = 32.9 bits (74), Expect = 0.055
Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 11/132 (8%)
Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
L ++ D+ + + + FE+ TG+K++ + ++ G D+I D
Sbjct: 8 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 67
Query: 83 TSLALNEDLLHKLPAHLIKKNSFV-----LKNENKKLMRISFDTQVLAYSTKRIKIADLP 137
LL ++ ++ N KL+ + L+ + + + P
Sbjct: 68 FGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPP 127
Query: 138 KSVFDLTNAQWK 149
K+ ++ +
Sbjct: 128 KTWEEIPALDKE 139
>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
Length = 629
Score = 32.2 bits (73), Expect = 0.073
Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 101 KKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIAPNNIS 160
+ ++ E ++L + T Y K L + + ++ + + + +
Sbjct: 144 RTEDIIIPLEKEQLASLKGSTVKSIYRFDDKKNVILSPVYVNYNKVRTEEEM-VKQHGAN 202
Query: 161 FHRLLNTMEQTPNKTVVQDFIK 182
+ RL P+ V F++
Sbjct: 203 YFRLTLQDHFRPDDPDVDKFLE 224
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic
protein; HIV, antiviral protein; 2.80A {Escherichia
coli}
Length = 471
Score = 32.0 bits (72), Expect = 0.081
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVI-ITKDE 82
L ++ D+ + + + FE+ TG+K++ + ++ G D+I D
Sbjct: 21 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 80
Query: 83 TSLALNEDLLHKLPAHLIKKNSFV 106
LL ++ ++
Sbjct: 81 FGGYAQSGLLAEITPDKAFQDKLY 104
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 32.2 bits (73), Expect = 0.086
Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 57/144 (39%)
Query: 32 YTDQ-NQSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITKDETSL-ALNE 89
Y ++ N LP + V+IS + +++++ SL LN
Sbjct: 352 YVNKTNSH--LP-----AGKQ-VEISLV------------NGAKNLVVSGPPQSLYGLN- 390
Query: 90 DLLH----KLPAHL----I----KKNSFVLKNENKKLMRIS--FDTQVLAYSTKRIKIAD 135
L K P+ L I +K F N+ L ++ F + +L ++ I D
Sbjct: 391 --LTLRKAKAPSGLDQSRIPFSERKLKFS----NRFL-PVASPFHSHLLVPASDLIN-KD 442
Query: 136 LPKS------------VFDLTNAQ 147
L K+ V+D +
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGS 466
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Length = 237
Score = 31.9 bits (71), Expect = 0.086
Identities = 17/142 (11%), Positives = 44/142 (30%), Gaps = 5/142 (3%)
Query: 35 QNQSVMLPIIHSFEERTGVKISPIYTSSIQRPPITQGSPVDVIITKDETSL--ALNEDLL 92
+ ++ ++ FE+ TG K+ I + + + + VD+++T + + +
Sbjct: 16 YHSGLLDYLLPQFEKDTGYKVDVIAAGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYG 75
Query: 93 HKLPAHLIKKNSFVLKNENKKLMRISFDTQ---VLAYSTKRIKIADLPKSVFDLTNAQWK 149
+ V + ++ + I+ S +
Sbjct: 76 VLPRKLMYNDFVIVGPKADPAKIKDDESVLDVFKEIANKNATFISRGDDSGTHKKEMGFW 135
Query: 150 KRLSIAPNNISFHRLLNTMEQT 171
+ I PN + + M T
Sbjct: 136 AQTKIEPNFGGYRSVGQGMGPT 157
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding
protein, thermophilic protein, periplasmic binding
protein; HET: MLR; 1.95A {Thermus thermophilus HB27}
Length = 386
Score = 31.8 bits (70), Expect = 0.10
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 30 TLYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQ-----RPPITQGSPVDVIITKDETS 84
T + + +FE +G K+ + + QG D+++T
Sbjct: 7 THFGGPELEWLKEQARTFERTSGTKVEVVEVPFAEIKQKFILGAPQGQAADLVVTVPHDW 66
Query: 85 LA 86
+
Sbjct: 67 VG 68
>2gha_A Maltose ABC transporter, periplasmic maltose- binding protein;
periplasmic binding protein, MBP, maltotriose, sugar
binding protein; HET: MLR; 1.60A {Thermotoga maritima
MSB8} PDB: 2ghb_A 2fnc_A*
Length = 382
Score = 31.7 bits (70), Expect = 0.13
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 29 LTLYTDQNQS-VMLPIIHSFEERTGVKISPIYTSSIQ-----RPPITQGSPVDVI-ITKD 81
LT++ + Q ++ + F+ + GV++ Y + +G D+I D
Sbjct: 5 LTIWCSEKQVDILQKLGEEFKAKYGVEVEVQYVNFQDIKSKFLTAAPEGQGADIIVGAHD 64
Query: 82 ETSLALNEDLLHKLP 96
L+ +P
Sbjct: 65 WVGELAVNGLIEPIP 79
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP
fusion, AHA1/BPI domain-like, super roll, sugar T
transport, allergen; HET: GLC; 2.35A {Escherichia coli}
PDB: 1mg1_A*
Length = 568
Score = 30.8 bits (69), Expect = 0.19
Identities = 19/135 (14%), Positives = 45/135 (33%), Gaps = 19/135 (14%)
Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVIITK-DE 82
L ++ D+ + + + FE+ TG+K++ + ++ G D+I D
Sbjct: 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66
Query: 83 TSLALNEDLLHKLPAHLIKKNSFVLKNENKKLMR---------ISFDTQVLAYSTKRIKI 133
LL ++ ++ +R I+ + L Y+ +
Sbjct: 67 FGGYAQSGLLAEITPAAAFQDKLY--PFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN 124
Query: 134 ADLPKSVFDLTNAQW 148
PK+ ++
Sbjct: 125 P--PKTWEEIPALDK 137
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein,
ABC transporter, transport protein; HET: TPS; 2.25A
{Escherichia coli}
Length = 330
Score = 30.1 bits (66), Expect = 0.32
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 29 LTLYT-DQNQSVMLP---IIHSFEERTGVKISPIYTSS----IQRPPITQGSP-VDVIIT 79
LT+YT D + P + +FE ++ + + R + + DV++
Sbjct: 25 LTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLG 84
Query: 80 KDETSL 85
D L
Sbjct: 85 LDNNLL 90
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator
protein R and maltose...; novel fold for DNA binding;
HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28
c.94.1.1
Length = 487
Score = 29.8 bits (66), Expect = 0.45
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 29 LTLYT--DQNQSVMLPIIHSFEERTGVKISPIYTSSIQ---RPPITQGSPVDVIITK-DE 82
L ++ D+ + + + FE+ TG+K++ + ++ G D+I D
Sbjct: 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR 66
Query: 83 TSLALNEDLLHKLPAHLIKKNSFV 106
LL ++ ++
Sbjct: 67 FGGYAQSGLLAEITPDKAFQDKLY 90
>1amf_A Molybdate transport protein MODA; periplasmic, binding protein;
1.75A {Escherichia coli} SCOP: c.94.1.1 PDB: 1wod_A
Length = 233
Score = 29.2 bits (64), Expect = 0.55
Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 18/145 (12%)
Query: 29 LTLYTDQN-QSVMLPIIHSFEERTGVKISPIYTSS-IQRPPITQGSPVDVIITKDETSLA 86
+T++ + + M I F++ GV + + SS I G+P D+ I+ A
Sbjct: 5 ITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFIS------A 58
Query: 87 LNEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNA 146
+ + + + I + + ++ V+ ++ S + T+
Sbjct: 59 DQKWMDYAVDKKAIDTATRQ---------TLLGNSLVVVAPKASVQKDFTIDSKTNWTSL 109
Query: 147 QWKKRLSIA-PNNISFHRLLNTMEQ 170
RL++ P ++ Q
Sbjct: 110 LNGGRLAVGDPEHVPAGIYAKEALQ 134
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic
binding protein fold, structural genomics, PSI-2; HET:
GTT CIT; 2.41A {Wolinella succinogenes}
Length = 242
Score = 29.3 bits (64), Expect = 0.55
Identities = 7/56 (12%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 29 LTLYT---DQNQSVMLPIIHSFEERTGVKISPIYTSS---IQRPPITQGSPVDVII 78
L + T N ++ + ++++ TGV + + + ++ V +
Sbjct: 7 LRMATTTSTDNTGLLDVLAPAYKKDTGVDLKWVAVGTGNALKL--GENCDVDVVFV 60
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET:
GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A*
2zym_A* 2zyn_A* 2dfz_A*
Length = 397
Score = 29.5 bits (64), Expect = 0.56
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 14 CG-----FTEAFSTENTTKYLTLYTDQNQSVMLP----IIHSFEERTGVKISPIYTSSIQ 64
CG + +A +E L ++ + + V L F ++TG+++ + + ++
Sbjct: 1 CGPKRDPYAKAGKSEGKPDKLVVWENADDGVQLNNTKKWAGEFTKKTGIQVEVVPVALLK 60
Query: 65 -----RPPITQGSPVDVII 78
G D++
Sbjct: 61 QQEKLTLDGPAGKGADLVT 79
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL,
peptidoglycan, hydrolase; 1.00A {Mycobacterium
tuberculosis} PDB: 2xiv_A*
Length = 214
Score = 29.3 bits (65), Expect = 0.57
Identities = 5/33 (15%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 31 LYTDQNQSVMLPIIHSFEERTGVKISPIYTSSI 63
+Y Q ++ + + V+++P+ T+ +
Sbjct: 177 IYLGNGQ-----MLEAPDVGLKVRVAPVRTAGM 204
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine
binding protein (POTF); 2.20A {Escherichia coli} SCOP:
c.94.1.1
Length = 344
Score = 29.0 bits (63), Expect = 0.70
Identities = 12/95 (12%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 32 YTDQNQSVMLPIIHSFEERTGVKISPIYTSS---IQRPPITQGSPVDVI-ITKDETSLAL 87
Y + + +FE+ TG+K+ S ++ + + D++ + L
Sbjct: 14 YIAPD------TVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQL 67
Query: 88 NEDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQ 122
+ L + + + K + + D +
Sbjct: 68 TAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNK 102
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP:
c.94.1.1
Length = 310
Score = 29.1 bits (64), Expect = 0.78
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 31 LYTDQNQSVMLPIIHSFEERTGVKISPIYT---SSIQRPPITQGSPVDVIITKDETSL 85
LY N++ +++ TG + + S Q + G D + +
Sbjct: 16 LYEQYNKA----FSAHWKQETGDNVVIDQSHGGSGKQATSVINGIEADTVTLALAYDV 69
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 701
Score = 28.8 bits (64), Expect = 0.81
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Query: 101 KKN---SFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIA-- 155
KKN + K E K L+ S ++ Y + +P+S FD ++K L
Sbjct: 422 KKNVKINIFEKEEGKNLLGPSILNEIYVY---DGNVIGIPES-FDGVKEEFKDFLEKGKS 477
Query: 156 ---PNNISF 161
I +
Sbjct: 478 EGVATGIRY 486
>2hhv_A DNA polymerase I; DNA replication, klenow fragment, protein- DNA
complex, O6-methyl-guanine, transferase/DNA complex;
HET: DNA 6OG SUC; 1.55A {Geobacillus stearothermophilus}
SCOP: c.55.3.5 e.8.1.1 PDB: 2hhs_A* 2hht_A* 2hhu_A*
2hhq_A* 2hhx_A* 2hw3_A* 1nk4_A* 1l3t_A* 1l3u_A* 1l3v_A*
1l5u_A* 1njw_A* 1l3s_A* 1njy_A* 1njz_A* 1nk0_A* 1njx_A*
1nk5_A* 1nk6_A* 1nk7_A* ...
Length = 580
Score = 28.0 bits (61), Expect = 1.4
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 89 EDLLHKLPAHLIKKNSFVLKNENKKLMRISFDTQVLAY 126
D K K+ + LK + +L +SFD + AY
Sbjct: 66 GDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAY 103
>2pt0_A MYO-inositol hexaphosphate phosphohydrolase; PTP, protein tyrosine
phosphatase, phytase, P-loop, cysteine-sulfonic acid,
oxidized thiol.; 1.70A {Selenomonas ruminantium} SCOP:
c.45.1.4 PDB: 2psz_A 3d1h_A 3d1o_A 3d1q_A 1u24_A 1u25_A*
1u26_A* 2b4o_A 2b4p_A 2b4u_A
Length = 340
Score = 27.2 bits (60), Expect = 2.3
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 96 PAHLIKKNSFVLKNENKKLMRISFDTQVLAYSTKRIKIADLPKSVFDLTNAQWKKRLSIA 155
A+L K L +E +L T +A K K+ + + + Q ++ ++ A
Sbjct: 148 WANLGKSQHEALADERHRLHAALHKTVYIAPLGKH-KLPEGGEVR-RVQKVQTEQEVAEA 205
Query: 156 PNNISFHRLLNTMEQTPNKTVVQDFIKNI 184
+ + R+ T P + F+
Sbjct: 206 -AGMRYFRIAATDHVWPTPENIDRFLAFY 233
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus
musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB:
1kdh_A* 1kej_A*
Length = 381
Score = 26.2 bits (57), Expect = 5.3
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 74 VDVIITKDETSLALNEDLLHKLPAHLIKKN----SFVLKNENKKLMRISFDTQVLAYSTK 129
VD +IT E + + LLHK+ ++ +L++ +K + S L + K
Sbjct: 215 VDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQK 274
Query: 130 RIKIADLPKS 139
I L
Sbjct: 275 CFLILKLDHG 284
>3h41_A NLP/P60 family protein; NP_979181.1, NLPC/P60 family protein,
structural genomics, joint center for structural
genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus
atcc 10987}
Length = 311
Score = 25.9 bits (56), Expect = 5.8
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 5/36 (13%)
Query: 31 LYTDQNQSVMLPIIHSFEERTGVKISPIYTSSIQRP 66
+Y +IHS V+I P+ T
Sbjct: 272 MYIGDGN-----MIHSPRAERSVEIIPLNTPGYIEE 302
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn
binding, metal-binding, oxidoreductase, zinc; NMR
{Methanothermobacterthermautotrophicus str}
Length = 151
Score = 25.6 bits (56), Expect = 8.2
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 129 KRIKIADLPKSVFD------LTNAQWKKRLS 153
RI I + K+ + L++ +W++ L
Sbjct: 3 DRIPIFSVAKNRVEMVERIELSDDEWREILD 33
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.133 0.371
Gapped
Lambda K H
0.267 0.0514 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,517,774
Number of extensions: 63753
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 55
Length of query: 195
Length of database: 5,693,230
Length adjustment: 87
Effective length of query: 108
Effective length of database: 3,584,002
Effective search space: 387072216
Effective search space used: 387072216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)