Query gi|254780564|ref|YP_003064977.1| hypothetical protein CLIBASIA_02255 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 107 No_of_seqs 103 out of 848 Neff 5.0 Searched_HMMs 33803 Date Wed Jun 1 16:04:27 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780564.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2qry_A Thiamine-binding perip 99.6 6.5E-15 1.9E-19 100.9 7.2 78 28-105 129-206 (207) 2 >1y9u_A Putative iron binding 99.2 1.9E-11 5.5E-16 82.2 6.7 98 9-106 212-310 (323) 3 >2voz_A FUTA2, periplasmic iro 99.2 4.9E-11 1.4E-15 80.0 7.8 89 18-106 246-334 (346) 4 >1eu8_A Trehalose/maltose bind 99.2 4.3E-11 1.3E-15 80.3 6.2 93 4-96 201-298 (302) 5 >1q35_A Iron binding protein F 99.2 9.5E-11 2.8E-15 78.4 7.5 102 5-106 198-302 (320) 6 >2pt1_A Iron transport protein 99.2 8.1E-11 2.4E-15 78.8 7.1 103 4-106 214-322 (334) 7 >3e13_X Putative iron-uptake A 99.1 2.7E-10 7.9E-15 76.0 7.4 88 19-106 219-306 (322) 8 >1xvx_A YFUA; periplasmic iron 99.1 1E-09 3.1E-14 72.8 10.2 97 5-101 198-297 (312) 9 >1nnf_A Iron-utilization perip 99.1 3.2E-10 9.5E-15 75.6 7.5 84 15-98 207-290 (309) 10 >3cvg_A Putative metal binding 99.1 1E-10 3.1E-15 78.2 3.8 67 19-86 221-287 (294) 11 >2b3f_A Glucose-binding protei 99.0 1.6E-09 4.6E-14 71.8 7.0 76 8-83 103-178 (202) 12 >3k6v_A Solute-binding protein 98.9 5.2E-10 1.5E-14 74.4 3.9 77 6-83 83-173 (185) 13 >3thi_A Protein (thiaminase I) 98.9 3.7E-09 1.1E-13 69.8 8.1 79 4-82 232-310 (371) 14 >1elj_A Maltodextrin-binding p 98.9 1.7E-09 5E-14 71.7 3.8 89 2-90 170-264 (281) 15 >2zyo_A Solute-binding protein 98.8 2E-09 5.9E-14 71.3 3.7 67 26-92 130-196 (213) 16 >3c9h_A ABC transporter, subst 98.8 2.7E-09 8E-14 70.6 4.2 85 5-94 236-321 (355) 17 >1urs_A Maltose-binding protei 98.8 2.7E-09 7.9E-14 70.6 3.4 66 27-92 144-209 (220) 18 >1twy_A ABC transporter, perip 98.8 6.3E-09 1.9E-13 68.6 4.6 55 26-81 229-283 (290) 19 >1pot_A POTD, spermidine/putre 98.8 3.5E-08 1E-12 64.6 8.3 84 4-92 207-292 (325) 20 >3k01_A Acarbose/maltose bindi 98.7 1.1E-08 3.4E-13 67.2 4.9 64 28-91 143-206 (222) 21 >2hxw_A Major antigenic peptid 98.7 1.3E-08 3.7E-13 67.0 4.7 53 26-80 185-237 (237) 22 >1a99_A POTF, putrescine-bindi 98.7 2E-08 6E-13 65.8 5.0 79 4-82 219-298 (344) 23 >2gh9_A Maltose/maltodextrin-b 98.7 4.7E-08 1.4E-12 63.9 5.9 82 4-85 234-318 (386) 24 >2heu_A Sugar ABC transporter, 98.7 6.2E-08 1.8E-12 63.2 6.5 90 4-93 258-351 (401) 25 >2v84_A Spermidine/putrescine 98.6 1.2E-07 3.6E-12 61.6 7.1 52 30-81 133-184 (208) 26 >3kn3_A Putative periplasmic p 98.6 1.3E-07 3.9E-12 61.4 6.1 60 4-68 174-239 (242) 27 >2gha_A Maltose ABC transporte 98.5 8.8E-08 2.6E-12 62.4 4.8 59 25-83 112-171 (195) 28 >3cfx_A UPF0100 protein MA_028 98.5 8.2E-08 2.4E-12 62.6 4.5 41 33-74 86-126 (127) 29 >2zxt_A Maltose-binding peripl 98.5 1.1E-07 3.4E-12 61.8 4.8 78 9-86 96-174 (194) 30 >3f5f_A Maltose-binding peripl 98.5 1.1E-07 3.4E-12 61.8 3.9 78 9-86 96-174 (194) 31 >3h3g_A Fusion protein of malt 98.4 1.8E-07 5.2E-12 60.8 4.3 75 12-86 101-176 (196) 32 >3kjt_A Maltose-binding peripl 98.4 1.6E-07 4.7E-12 61.0 3.9 76 9-84 98-174 (196) 33 >3cij_A UPF0100 protein AF_009 98.4 2.9E-07 8.5E-12 59.6 4.8 39 33-71 86-124 (127) 34 >2vgq_A Maltose-binding peripl 98.4 1.9E-07 5.7E-12 60.5 3.7 62 22-83 128-190 (213) 35 >3cg1_A UPF0100 protein PF0080 98.4 3.9E-07 1.1E-11 58.9 5.1 40 33-72 91-130 (132) 36 >2nvu_B Maltose binding protei 98.4 2.1E-07 6.1E-12 60.4 3.7 61 23-83 118-180 (203) 37 >1mg1_A Protein (HTLV-1 GP21 e 98.3 2.9E-07 8.6E-12 59.6 3.3 57 27-83 106-163 (186) 38 >2uvj_A TOGB, ABC type peripla 98.3 7.4E-07 2.2E-11 57.4 4.0 52 29-80 112-163 (173) 39 >1y4c_A Maltose binding protei 98.2 1.5E-06 4.6E-11 55.7 3.6 55 27-81 110-166 (189) 40 >1atg_A MODA, periplasmic moly 98.0 1.3E-05 3.9E-10 50.7 5.2 41 34-74 85-125 (126) 41 >1pc3_A Phosphate-binding prot 97.9 2.8E-06 8.3E-11 54.3 0.4 44 38-81 296-339 (350) 42 >3gzg_A Molybdate-binding peri 97.7 4.3E-05 1.3E-09 47.9 4.1 65 2-71 78-143 (146) 43 >2z8f_A Galacto-N-biose/lacto- 97.6 7.2E-05 2.1E-09 46.7 4.6 61 20-83 124-184 (195) 44 >1amf_A Molybdate transport pr 97.5 0.00017 5E-09 44.7 5.3 66 3-72 59-124 (126) 45 >1j1n_A ALGQ2; alginate, suger 97.3 0.00035 1E-08 43.0 4.3 40 30-69 140-179 (228) 46 >1hsj_A Fusion protein consist 96.6 0.0027 7.9E-08 38.2 4.2 51 27-77 113-165 (169) 47 >3iot_A Maltose-binding protei 96.0 0.01 3E-07 35.1 4.7 51 27-77 113-165 (173) 48 >1r6z_P Chimera of maltose-bin 96.0 0.01 3.1E-07 35.0 4.7 50 27-76 114-165 (174) 49 >3cfz_A UPF0100 protein MJ1186 95.2 0.013 3.8E-07 34.5 2.6 33 34-68 88-120 (126) 50 >1mh3_A Maltose binding-A1 hom 95.2 0.019 5.5E-07 33.6 3.4 45 25-69 106-151 (168) 51 >3dm0_A Maltose-binding peripl 94.6 0.056 1.6E-06 31.1 4.6 39 31-69 113-152 (165) 52 >1sbp_A Sulfate-binding protei 94.0 0.027 7.9E-07 32.8 2.0 33 46-79 101-133 (141) 53 >2w7y_A FCSSBP, probable sugar 84.6 1.3 3.7E-05 23.7 3.9 39 34-72 141-183 (185) 54 >3csg_A MBP, maltose-binding p 77.8 2.9 8.6E-05 21.8 3.8 28 30-57 73-100 (101) 55 >3dm0_A Maltose-binding peripl 70.3 0.027 8E-07 32.8 -8.1 51 4-54 69-120 (120) 56 >1ibj_A CBL, cystathionine bet 68.3 8.3 0.00025 19.3 4.3 56 3-58 12-72 (138) 57 >3iol_B Glucagon; receptor-lig 40.1 13 0.00037 18.3 1.3 15 47-61 16-30 (31) 58 >1jrj_A Exendin-4; Trp-CAGE, G 33.7 24 0.0007 16.9 1.9 20 47-66 16-35 (39) 59 >3fhd_A ORF 37; enase like PD- 25.8 44 0.0013 15.4 2.1 18 53-70 2-19 (75) 60 >1qqp_4 FMDV, protein (genome 25.6 12 0.00036 18.4 -0.7 15 1-15 21-35 (85) 61 >3e6g_A Xometc, cystathionine 25.6 52 0.0015 15.0 3.2 56 3-58 12-73 (138) 62 >2r4f_A 3-hydroxy-3-methylglut 23.6 57 0.0017 14.8 3.7 37 44-80 9-48 (105) 63 >2w45_A Nuclease, alkaline exo 22.8 59 0.0018 14.7 2.4 20 51-70 17-36 (94) 64 >1pff_A Methionine gamma-lyase 22.5 60 0.0018 14.7 3.8 55 3-57 12-71 (137) 65 >2qtl_A MSR;, methionine synth 21.0 38 0.0011 15.8 1.1 28 41-69 13-40 (44) 66 >2g49_C Glucagon preproprotein 20.7 46 0.0013 15.3 1.4 12 48-59 17-28 (29) 67 >3g63_A Pfluding; subatomic re 20.6 0.48 1.4E-05 26.0 -8.7 22 48-69 265-286 (302) No 1 >>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli} (A:1-128,A:240-318) Probab=99.56 E-value=6.5e-15 Score=100.90 Aligned_cols=78 Identities=22% Similarity=0.245 Sum_probs=75.4 Q ss_pred CCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC Q ss_conf 851068654121631699889999999998399999999740021001068767421012554472565865786307 Q gi|254780564|r 28 DIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNP 105 (107) Q Consensus 28 D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~~~~~~~~~~~d~~~l~~~a~n~ 105 (107) +-|+++.+.+++|+|+|||+++|++||+|++|+++|..+++.++++|+++++..++.+++...++...+|...+++|+ T Consensus 129 ~eG~~~~~~~~~i~k~a~~~e~A~~fi~~~ls~e~Q~~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 206 (207) T 2qry_A 129 SEGHYLQVEVAARTAASKQPELAQKFLQFXVSPAFQNAIPTGNWXYPVANVTLPAGFEKLTKPATTLEFTPAEVAAQR 206 (207) T ss_dssp TTCEEEEEEEEEEBTTCSCHHHHHHHHHHHTSHHHHTTHHHHTCSEESSCCCCCTTGGGSCCCSSEECCCHHHHHHHH T ss_pred CCCEEEEEEHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHH T ss_conf 476488620213433898779999999997599999999984760126887688656642474234669999999999 No 2 >>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} (A:) Probab=99.23 E-value=1.9e-11 Score=82.22 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=84.0 Q ss_pred HHHHCCCCCCEEECCCCC-CCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCCCCCC Q ss_conf 985148785355046589-9851068654121631699889999999998399999999740021001068767421012 Q gi|254780564|r 9 IFKNHHSEVSVSYTPFLP-KDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFND 87 (107) Q Consensus 9 ~~k~~~~~~~v~~~~f~~-~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~~~~~ 87 (107) .+...+.++.+..++... ++.|+.+...+.+|.++|+|+++|.+||+||+|+++|+.++.....+|+++.+..++.+.. T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fi~~l~s~e~q~~~~~~~g~~P~~~~~~~~~~~~~ 291 (323) T 1y9u_A 212 DARKWGDAIKVVRPTFATAKDGGTHVNISGAAVAAHAPNKANAVKLLEYLVSEPAQTLYAQANYEYPVRAGVKLDAVVAS 291 (323) T ss_dssp HHHHHHHTEEEECCBCC----CCBCEEEEEEEEETTCTTHHHHHHHHHHHTSHHHHHHHHHHTTCEESSTTCCCCHHHHH T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCEECCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCEECCCCCCCCCHHHCC T ss_conf 23445543123575325678887310110145416896279999999996299999999973645217899999801157 Q ss_pred CCCCCCCCCCHHHHHHCCC Q ss_conf 5544725658657863078 Q gi|254780564|r 88 QTYTNRESFELIKTAQNPP 106 (107) Q Consensus 88 ~~~~~~d~~~l~~~a~n~p 106 (107) ...+++...+....++++| T Consensus 292 ~~~~~~~~~~~~~~~~~~~ 310 (323) T 1y9u_A 292 FGPLKVDTLPVAEIAKYRK 310 (323) T ss_dssp TCCCCBCCSCTHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHCCH T ss_conf 5546867789999975469 No 3 >>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A* (A:) Probab=99.21 E-value=4.9e-11 Score=79.99 Aligned_cols=89 Identities=18% Similarity=0.328 Sum_probs=80.3 Q ss_pred CEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 35504658998510686541216316998899999999983999999997400210010687674210125544725658 Q gi|254780564|r 18 SVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFE 97 (107) Q Consensus 18 ~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~~~~~~~~~~~d~~~ 97 (107) ....++......|+.+...+.+|.++|+|+++|.+||+||+|+|+|+.+++.....|+++++..++.+.+...++....+ T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fi~~l~s~e~q~~~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~~~ 325 (346) T 2voz_A 246 SLFFPNTGSGERGTHVNVSGAGVLKNAPNRDAAIAFLEYLASDDAQRYFAEGNNEYPVIPGVPIDPVLAAHGQLKGDPLN 325 (346) T ss_dssp EEECCSCSTTSCCBCEEEEEEEEBTTCTTHHHHHHHHHHHTSHHHHHHHHHHTTCEESSTTSCCCHHHHTTCCCCBCCSC T ss_pred CEEEECCCCCCCCCEEEHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCEECCCCCCCCCHHHCCCCCCCCCCCC T ss_conf 33541023576541333101323169997799999999976999999999617352177899999111574336878889 Q ss_pred HHHHHHCCC Q ss_conf 657863078 Q gi|254780564|r 98 LIKTAQNPP 106 (107) Q Consensus 98 l~~~a~n~p 106 (107) +..++++.| T Consensus 326 ~~~~~~~~~ 334 (346) T 2voz_A 326 VSNLGRYQP 334 (346) T ss_dssp THHHHHTHH T ss_pred HHHHHHCCH T ss_conf 999985349 No 4 >>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} (A:1-174,A:231-358) Probab=99.18 E-value=4.3e-11 Score=80.26 Aligned_cols=93 Identities=19% Similarity=0.127 Sum_probs=72.6 Q ss_pred HHHHHHHHHCCCCCCEE----E-CCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCC Q ss_conf 78999985148785355----0-465899851068654121631699889999999998399999999740021001068 Q gi|254780564|r 4 ASSVAIFKNHHSEVSVS----Y-TPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKG 78 (107) Q Consensus 4 ~yy~~~~k~~~~~~~v~----~-~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~g 78 (107) +.++..+...+.++... . +.+...+.|+++.+.+.+|.|+++|+++|++||+||+|+++|+.++...+.+|++++ T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~~i~k~s~~~e~A~~fi~~l~s~e~q~~~~~~~g~~p~~~~ 280 (302) T 1eu8_A 201 PYAWGLHNADDSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKYSDNKALAWEFVKFVESYSVQKGFAMNLGWNPGRVD 280 (302) T ss_dssp THHHHHHTSTTCTTTTCEEEECCCBCTTSCCCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHHHHHHHHHHTCCCBSBTT T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEECCEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHH T ss_conf 27888765452255785799956667999875222453899978984499999999995799999999998589976277 Q ss_pred CCCCCCCCCCCCCCCCCC Q ss_conf 767421012554472565 Q gi|254780564|r 79 IITNRKFNDQTYTNRESF 96 (107) Q Consensus 79 V~~~~~~~~~~~~~~d~~ 96 (107) +..++.+.+.-.+.++.+ T Consensus 281 ~~~~~~~~~~~~~~~~~~ 298 (302) T 1eu8_A 281 VYDDPAVVSKSPHLKELR 298 (302) T ss_dssp GGGSHHHHHHCTHHHHTH T ss_pred HHHCHHHHHCCHHHHHHH T ss_conf 760987562295799999 No 5 >>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} (A:) Probab=99.16 E-value=9.5e-11 Score=78.42 Aligned_cols=102 Identities=19% Similarity=0.146 Sum_probs=83.5 Q ss_pred HHHHHHHHCCCCCC---EEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCC Q ss_conf 89999851487853---550465899851068654121631699889999999998399999999740021001068767 Q gi|254780564|r 5 SSVAIFKNHHSEVS---VSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIIT 81 (107) Q Consensus 5 yy~~~~k~~~~~~~---v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~ 81 (107) +..+.+........ ...+++.....|+.+...+.+|.++|+|+++|.+||+||+|+|+|+.+++.....|+++++.. T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~aA~~fi~~l~s~e~q~~~~~~~g~~P~~~~~~~ 277 (320) T 1q35_A 198 YYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHSPNKANAVKLIEYLSGEKAQGLYAELNHEYPVKEGIEP 277 (320) T ss_dssp HHHHHHHHSTTTHHHHHTEEEECCCSTTCBEEEEEEEEEBTTCTTHHHHHHHHHHHHSHHHHHHHHHHHCCEESSTTCCC T ss_pred EEEHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCEECCCCCCCC T ss_conf 32023566667766521674212334477258742578766899889999999996299999999972652017889999 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCC Q ss_conf 4210125544725658657863078 Q gi|254780564|r 82 NRKFNDQTYTNRESFELIKTAQNPP 106 (107) Q Consensus 82 ~~~~~~~~~~~~d~~~l~~~a~n~p 106 (107) ++.++++...+.+..+...++.+.| T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (320) T 1q35_A 278 SAIVKGWGTFKSDTIKLEDIAKNYE 302 (320) T ss_dssp CHHHHHTCCCCBCCCCHHHHHTTHH T ss_pred CHHHCCCCCCCCCCCCHHHHHHHHH T ss_conf 9123564436877789999987569 No 6 >>2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, periplasmic binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A (A:) Probab=99.16 E-value=8.1e-11 Score=78.78 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=82.9 Q ss_pred HHHHHHHHHCCCCCC------EEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCC Q ss_conf 789999851487853------55046589985106865412163169988999999999839999999974002100106 Q gi|254780564|r 4 ASSVAIFKNHHSEVS------VSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIK 77 (107) Q Consensus 4 ~yy~~~~k~~~~~~~------v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~ 77 (107) .+.+..+........ ...........|+.....+.+|.++|+|+++|.+||+||+|+|+|+.+++.....|+++ T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~aA~~fi~~l~s~e~q~~~~~~~g~~P~~~ 293 (334) T 2pt1_A 214 TYYMGRLLESEDPAQKAIAENVGVFFPNQEGRGTHVNVSGVGVVKTAPNREGAVKFIEFLVSEPAQAFLAQNNYEYPVLA 293 (334) T ss_dssp HHHHHHHHTCSCHHHHHHHHTEEEECCCTTTTCBCEEEEEEEEBTTCTTHHHHHHHHHHHTSHHHHHHHHHHHCCEESST T ss_pred CCCEEEECCCCCHHHHHCCCCCCEEECCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCEECCCC T ss_conf 31001110244213330234664240245888726899988861589867999999999749999999998466123778 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCC Q ss_conf 87674210125544725658657863078 Q gi|254780564|r 78 GIITNRKFNDQTYTNRESFELIKTAQNPP 106 (107) Q Consensus 78 gV~~~~~~~~~~~~~~d~~~l~~~a~n~p 106 (107) .+..++.+.+...+.....+...+..+.| T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (334) T 2pt1_A 294 GVPLNKSVASFGEFKSDTTSLDKLGPALA 322 (334) T ss_dssp TCCCCHHHHTTCCCCBCCSCGGGTGGGHH T ss_pred CCCCCHHHCCCCCCCCCCCCHHHHHHCCH T ss_conf 99998000673103877678999864649 No 7 >>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} PDB: 1y4t_A (X:) Probab=99.10 E-value=2.7e-10 Score=75.98 Aligned_cols=88 Identities=19% Similarity=0.261 Sum_probs=77.3 Q ss_pred EEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCH Q ss_conf 55046589985106865412163169988999999999839999999974002100106876742101255447256586 Q gi|254780564|r 19 VSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFEL 98 (107) Q Consensus 19 v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~~~~~~~~~~~d~~~l 98 (107) ....+...+..+..+...+.+|.++|+|+++|.+||+||+|+++|+.+++.....|+++.+..++.+++...+..+..+. T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~i~~~s~~~eaA~~fi~~l~s~e~q~~~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~ 298 (322) T 3e13_X 219 LGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSPEIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPV 298 (322) T ss_dssp EEEECTTTTTTCBCEEEEEEEEETTCSCHHHHHHHHHHHTSHHHHHHHHHTTCCEESSTTSCCCHHHHHHCCCCBCCSCH T ss_pred EEEECCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCH T ss_conf 11444788877507886689997899999999999999769999999998549867875788990015643148665899 Q ss_pred HHHHHCCC Q ss_conf 57863078 Q gi|254780564|r 99 IKTAQNPP 106 (107) Q Consensus 99 ~~~a~n~p 106 (107) ..++.+.| T Consensus 299 ~~~~~~~~ 306 (322) T 3e13_X 299 SKIAENIK 306 (322) T ss_dssp HHHHTTHH T ss_pred HHHHHHHH T ss_conf 99986499 No 8 >>1xvx_A YFUA; periplasmic iron binding protein; 1.53A {Yersinia enterocolitica} (A:) Probab=99.09 E-value=1e-09 Score=72.79 Aligned_cols=97 Identities=20% Similarity=0.173 Sum_probs=77.9 Q ss_pred HHHHHHHHCCCC--CCEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCC-CCHHCCCCCC Q ss_conf 899998514878--5355046589985106865412163169988999999999839999999974002-1001068767 Q gi|254780564|r 5 SSVAIFKNHHSE--VSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALG-EYPIIKGIIT 81 (107) Q Consensus 5 yy~~~~k~~~~~--~~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~-eyPv~~gV~~ 81 (107) +....+...... ..+...++.....|+.+...+.+|.++|+|+++|.+||+||+|+|+|+.+++... ..|+.+.+.. T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~eaA~~fi~~l~s~e~q~~~~~~~g~~~p~~~~~~~ 277 (312) T 1xvx_A 198 YYRFVDQAKTGENSGKTQLHYFKHQDPGAFVSISGGGVLASSKHPKEAQEFVKWITGKSGQDILRTNNAFEYAVGVDAAS 277 (312) T ss_dssp HHHHHHHTTTCTTTTTCEEECCCTTCGGGCEEEEEEEEBTTCSSHHHHHHHHHHHHSHHHHHHHHHSSSCCBCCBTTCCC T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 18999887642024440365246788862442101553079999999999999855999999998648610547788878 Q ss_pred CCCCCCCCCCCCCCCCHHHH Q ss_conf 42101255447256586578 Q gi|254780564|r 82 NRKFNDQTYTNRESFELIKT 101 (107) Q Consensus 82 ~~~~~~~~~~~~d~~~l~~~ 101 (107) ++.+.++..+.....++... T Consensus 278 ~~~~~~~~~~~~~~~~~~~~ 297 (312) T 1xvx_A 278 NPKLVPLKDLDAPKVEPSKL 297 (312) T ss_dssp CTTSCCGGGSCCCCCCGGGC T ss_pred CCCCCCHHHCCCCCCCHHHC T ss_conf 81438822228665895671 No 9 >>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} (A:) Probab=99.09 E-value=3.2e-10 Score=75.56 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=72.6 Q ss_pred CCCCEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCC Q ss_conf 78535504658998510686541216316998899999999983999999997400210010687674210125544725 Q gi|254780564|r 15 SEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRE 94 (107) Q Consensus 15 ~~~~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~~~~~~~~~~~d 94 (107) ....+..+++.+...|+.+...+.+|.++|+|+++|.+||+||+|+++|+.++.....+|+++++..++.+.+...+... T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~eaA~~fi~~l~s~e~q~~~~~~~g~~P~~~~~~~~~~~~~~~~~~~~ 286 (309) T 1nnf_A 207 ENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQAEAQKFVDFLASKKGQEALVAARAEYPLRADVVSPFNLEPYEKLEAP 286 (309) T ss_dssp GGCSEEEECCCTTCGGGCEEEEEEEEBTTCSCHHHHHHHHHHHHSHHHHHHHHHHSCCEECC-CCCCTTCCCCHHHHCCC T ss_pred CCCCCCEEECCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCEECCCCCCCCCCCCCCHHHCCCC T ss_conf 11344312012468985433220001179998999999999964999999999735452078899898234872121776 Q ss_pred CCCH Q ss_conf 6586 Q gi|254780564|r 95 SFEL 98 (107) Q Consensus 95 ~~~l 98 (107) ..++ T Consensus 287 ~~~~ 290 (309) T 1nnf_A 287 VVSA 290 (309) T ss_dssp CCCC T ss_pred CCCH T ss_conf 4318 No 10 >>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural genomics, protein structure initiative; 1.97A {Coccidioides immitis RS} (A:) Probab=99.05 E-value=1e-10 Score=78.18 Aligned_cols=67 Identities=10% Similarity=-0.001 Sum_probs=58.6 Q ss_pred EEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCCCCC Q ss_conf 55046589985106865412163169988999999999839999999974002100106876742101 Q gi|254780564|r 19 VSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFN 86 (107) Q Consensus 19 v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~~~~ 86 (107) .......|++ |+++.+.+++|+|+++|+++|++|++||+|+|+|+.+.+..+.+|+...|...+... T Consensus 221 ~~~~~v~p~~-g~~~~~~~~~i~k~a~~~~~A~~FidfllS~e~qq~i~~~~g~~p~~~~v~~~~~~~ 287 (294) T 3cvg_A 221 IYKKGTNDAD-DPLLNPAHLLVGARAKNAEXAKEFAKWLVSKEGGQKVIEGFKKDGQQLYSPAPYRHE 287 (294) T ss_dssp EEEECCSCTT-CTTEEEEEEEEBSSCSSHHHHHHHHHHHHSTTTHHHHHHTCEETTEECSEECCCC-- T ss_pred EEECCCCCCC-CCEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCEECEEECCCCCC T ss_conf 3202667788-634778899996898995999999999849098899999984469043154887767 No 11 >>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A* (A:1-121,A:269-349) Probab=98.97 E-value=1.6e-09 Score=71.83 Aligned_cols=76 Identities=13% Similarity=0.027 Sum_probs=60.1 Q ss_pred HHHHHCCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCC Q ss_conf 9985148785355046589985106865412163169988999999999839999999974002100106876742 Q gi|254780564|r 8 AIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNR 83 (107) Q Consensus 8 ~~~k~~~~~~~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~ 83 (107) ..++.++.-+++=+..-.=...|.++...+.+|.|+|+|+++|++||+||+|+|+|+.++....-.|+++++..+. T Consensus 103 ~~~~~dGk~ygiP~~~~~~~~~~~~~~~~~~~i~k~s~~~~aA~~fi~~l~s~e~q~~~~~~~g~~p~~~~a~~~~ 178 (202) T 2b3f_A 103 DLISYKGGIWSVPVNIHRSTQGVFMMLSDSFGLPKGAKNRQNAINWLRLVGSKEGQDTSNPLKGSIAARLDSDPSK 178 (202) T ss_dssp HHHEETTEECCEECCBEESCTTEEEEECEEECCBTTCTTHHHHHHHHHHHTSHHHHHHHHHHHSCBCSSTTCCGGG T ss_pred EEEEECCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHH T ss_conf 0035788331146545654788523456579998999789999999998469999999999729867778888143 No 12 >>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic binding protein, ABC transporter, transport protein, ligand; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A (A:1-123,A:293-354) Probab=98.95 E-value=5.2e-10 Score=74.42 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=56.0 Q ss_pred HHHHHHHCCCCCCEEECCC---CC--CCCCCE---------EEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCC Q ss_conf 9999851487853550465---89--985106---------865412163169988999999999839999999974002 Q gi|254780564|r 6 SVAIFKNHHSEVSVSYTPF---LP--KDIGNI---------LCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALG 71 (107) Q Consensus 6 y~~~~k~~~~~~~v~~~~f---~~--~D~G~~---------v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~ 71 (107) .+.++..++...-|....- .+ .+.|.+ ..+.+++|+|+++|+++|++|++||+|+|+|+++++ .+ T Consensus 83 ~~~~i~a~g~~pDV~~~~~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~i~k~~~~~~~A~~f~~fl~s~e~q~i~~~-~~ 161 (185) T 3k6v_A 83 SVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNPIVYGVTIPNNAENSELATEFVALLLGETGQQIFIE-NG 161 (185) T ss_dssp HHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCCEEEEECCTTCTTHHHHHHHHHHHHSHHHHHHHHH-TT T ss_pred HHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHH-CC T ss_conf 99999967999878998999999999966884632022036056899998999999999999999779999999998-69 Q ss_pred CCHHCCCCCCCC Q ss_conf 100106876742 Q gi|254780564|r 72 EYPIIKGIITNR 83 (107) Q Consensus 72 eyPv~~gV~~~~ 83 (107) .+|+.++|.... T Consensus 162 ~~p~~~~~~~~~ 173 (185) T 3k6v_A 162 QPPIVPAIAEGK 173 (185) T ss_dssp CCEEEEEEEESG T ss_pred CCCCCHHHCCCC T ss_conf 985894463564 No 13 >>3thi_A Protein (thiaminase I); thiamin degradation; 2.00A {Bacillus subtilis} (A:) Probab=98.94 E-value=3.7e-09 Score=69.82 Aligned_cols=79 Identities=6% Similarity=-0.007 Sum_probs=73.6 Q ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCC Q ss_conf 7899998514878535504658998510686541216316998899999999983999999997400210010687674 Q gi|254780564|r 4 ASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITN 82 (107) Q Consensus 4 ~yy~~~~k~~~~~~~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~ 82 (107) .+.+..++....++.+...|..++..+..+...+.+|.++|+|+++|.+||+||+|++.|..+.......|+.+++... T Consensus 232 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fl~~l~s~e~~~~~~~~~~~~p~~~~~~~~ 310 (371) T 3thi_A 232 SESMMRMGDYAEQVRFKPISSSAGQDIPLFYSDVVSVNSKTAHPELAKKLANVMASADTVEQALRPQADGQYPQYLLPA 310 (371) T ss_dssp TTHHHHHGGGGGTEEEECCBSCSSCCCCEEEEEEEEEETTCSCHHHHHHHHHHHHSHHHHHHHHSCCSTTCCCCCCEES T ss_pred HHHHHCCHHCCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHH T ss_conf 6875100111777646743688999977757418999889999899999999971999999999856777775455626 No 14 >>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} (A:1-163,A:221-338) Probab=98.86 E-value=1.7e-09 Score=71.68 Aligned_cols=89 Identities=18% Similarity=0.151 Sum_probs=73.3 Q ss_pred CCHHHHHHHHHCCCCCCEEECCCCCCC-----CCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHH-HHHHHCCCCHH Q ss_conf 447899998514878535504658998-----510686541216316998899999999983999999-99740021001 Q gi|254780564|r 2 INASSVAIFKNHHSEVSVSYTPFLPKD-----IGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQ-YIATALGEYPI 75 (107) Q Consensus 2 ~n~yy~~~~k~~~~~~~v~~~~f~~~D-----~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~-~~a~~~~eyPv 75 (107) ..++..+.++....++++...|..+.+ .+++....+.+|.++|+|+++|.+||+||+|++.|. .+.......|+ T Consensus 170 ~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~e~~~~~~~~~~g~~P~ 249 (281) T 1elj_A 170 NGPWSINDVKKAGINFGVVPLPPIIKDGKEYWPRPYGGVKLIYFAAGIKNKDAAWKFAKWLTTSEESIKTLALELGYIPV 249 (281) T ss_dssp ECGGGHHHHHHTTCCEEEECCCCEEETTEEECCCCEEEEEEEEEBTTCSCHHHHHHHHHHHHHCHHHHHHHHHHHCCBCC T ss_pred ECHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC T ss_conf 47789999985214723997577578887566421146516886189833999999999977889999999996398888 Q ss_pred CCCCCCCCCCCCCCC Q ss_conf 068767421012554 Q gi|254780564|r 76 IKGIITNRKFNDQTY 90 (107) Q Consensus 76 ~~gV~~~~~~~~~~~ 90 (107) .+.+..++.+.+... T Consensus 250 ~~~~~~~~~~~~~p~ 264 (281) T 1elj_A 250 LTKVLDDPEIKNDPV 264 (281) T ss_dssp BGGGGGCHHHHTCHH T ss_pred CHHHHHCHHHHCCHH T ss_conf 677874987653938 No 15 >>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A* (A:1-129,A:272-355) Probab=98.84 E-value=2e-09 Score=71.27 Aligned_cols=67 Identities=19% Similarity=0.174 Sum_probs=59.5 Q ss_pred CCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCC Q ss_conf 9985106865412163169988999999999839999999974002100106876742101255447 Q gi|254780564|r 26 PKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTN 92 (107) Q Consensus 26 ~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~~~~~~~~~~ 92 (107) .+..|+.+-..+.+|.|+|+|+++|.+||+||+|+++|+.+++.+...|+++++..++.++....++ T Consensus 130 ~~~~~~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~e~q~~~~~~~g~~P~~~~~~~~~~~~~~p~~~ 196 (213) T 2zyo_A 130 GKDAQTFIGVKGWYLSAYSKYPKYATELMQFLTSKEALASRFKETGEIPPQKELLNDPMIKNNPVVN 196 (213) T ss_dssp TBCCCCEEEEEEEEEETTCSCHHHHHHHHHHTTSHHHHHHHHHHHCCBCCBHHHHTSHHHHTCTTTH T ss_pred CCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHCHHHHHCHHHH T ss_conf 4676532122411115787401589999997247999999999848988857786296643296999 No 16 >>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} (A:) Probab=98.83 E-value=2.7e-09 Score=70.56 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=65.7 Q ss_pred HHHHHHHHCCCC-CCEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCC Q ss_conf 899998514878-5355046589985106865412163169988999999999839999999974002100106876742 Q gi|254780564|r 5 SSVAIFKNHHSE-VSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNR 83 (107) Q Consensus 5 yy~~~~k~~~~~-~~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~ 83 (107) .+...+...+.. +.... |.. |......+.+|.++|+|+++|.+||+||+|+|+|+.+++.....|+++.+..+. T Consensus 236 ~~~~~~~~~~~~~~~~~~----p~~-~~~~~~~~~~i~~~s~~~eaA~~fi~fl~s~e~q~~~~~~~g~~P~~~~~~~~~ 310 (355) T 3c9h_A 236 GSYAADWASRHPDVGIVL----PKD-YTVVMSRIGLVPEAAANPELGRRYLEFFMSKEGQTIMARQLQIPAVSPEVAGEN 310 (355) T ss_dssp HHHHHHHHHHCTTEEEEC----CSS-CEEEECCEEEEETTBSCHHHHHHHHHHHHSHHHHHHHHHHSCCCBCCTTCCSSS T ss_pred CHHHHHHHHCCCCEEEEE----ECC-CCEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 237666640588436899----407-855633479997799767999999999769999999998378677786667854 Q ss_pred CCCCCCCCCCC Q ss_conf 10125544725 Q gi|254780564|r 84 KFNDQTYTNRE 94 (107) Q Consensus 84 ~~~~~~~~~~d 94 (107) .++........ T Consensus 311 ~~~~~~~~~~~ 321 (355) T 3c9h_A 311 TANTMQAIHGA 321 (355) T ss_dssp BHHHHHHHHGG T ss_pred CCCHHHHCCCC T ss_conf 32101111222 No 17 >>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} (A:1-143,A:279-355) Probab=98.80 E-value=2.7e-09 Score=70.60 Aligned_cols=66 Identities=12% Similarity=0.081 Sum_probs=59.2 Q ss_pred CCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCC Q ss_conf 985106865412163169988999999999839999999974002100106876742101255447 Q gi|254780564|r 27 KDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTN 92 (107) Q Consensus 27 ~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~~~~~~~~~~ 92 (107) +..|..+-..+.+|.|+|+|+++|.+||+||+|+|+|..+++.....|+++.+..++.+.+...++ T Consensus 144 ~~~~~~~g~~~~~i~~~s~~~~aA~~fi~~l~s~e~q~~~~~~~g~~P~~~~~~~~~~~~~~p~~~ 209 (220) T 1urs_A 144 KHATPFLGVITAFVNKESKTQAADWSLVQALTSAQAQQMYFRDSQQIPALLSVQRSSAVQSSPTFK 209 (220) T ss_dssp CCCCCEEEEEEEEEBTTCSCHHHHHHHHHHHTSHHHHHHHHHHHCCEESSHHHHTSHHHHTCHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHCHHHHCCHHHH T ss_conf 654430001343333345302679999998307899999999709888737787496532096899 No 18 >>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} (A:) Probab=98.78 E-value=6.3e-09 Score=68.56 Aligned_cols=55 Identities=15% Similarity=-0.013 Sum_probs=48.5 Q ss_pred CCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCC Q ss_conf 99851068654121631699889999999998399999999740021001068767 Q gi|254780564|r 26 PKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIIT 81 (107) Q Consensus 26 ~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~ 81 (107) |.+ |+.+.+.+.+|+++++|+++|++||+||+|+|+|+.+++..+..|..+.+.. T Consensus 229 p~~-~~~~~~~~~~i~~~a~~~~~A~~Fi~~lls~e~Q~~~~~~g~~~~~~~~~~~ 283 (290) T 1twy_A 229 AKH-TYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYIXPSDVEEGG 283 (290) T ss_dssp HTT-CSCCEEEEEEEECTTTCCHHHHHHHHHHHSHHHHHHHHHTTCBCC------- T ss_pred CCC-CCCCEEEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHC T ss_conf 269-8863558999997999999999999998699889999978698786676625 No 19 >>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} (A:) Probab=98.78 E-value=3.5e-08 Score=64.56 Aligned_cols=84 Identities=20% Similarity=0.255 Sum_probs=67.8 Q ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCC-- Q ss_conf 789999851487853550465899851068654121631699889999999998399999999740021001068767-- Q gi|254780564|r 4 ASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIIT-- 81 (107) Q Consensus 4 ~yy~~~~k~~~~~~~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~-- 81 (107) ...+..+.....++.... +. .|+.....+.+|.++|+|+++|.+||+||+|+++|+.++......|+++++.. T Consensus 207 ~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~i~~~s~~~e~A~~fi~~l~s~e~q~~~~~~~~~~p~~~~~~~~~ 281 (325) T 1pot_A 207 NGSAFVARQAGTPIDVVW----PK-EGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLL 281 (325) T ss_dssp HHHHHHHHTTSCCEEEEC----CT-TCCEEEEEEEBCBTTCTTHHHHHHHHHHHHSHHHHHHHHHHHCCCCSBSTTTTTS T ss_pred HHHHHHHHHCCCCEEEEE----CC-CCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHC T ss_conf 055799874177504883----48-8746877502545899998999999999835999999999648889687888619 Q ss_pred CCCCCCCCCCC Q ss_conf 42101255447 Q gi|254780564|r 82 NRKFNDQTYTN 92 (107) Q Consensus 82 ~~~~~~~~~~~ 92 (107) ...++....+. T Consensus 282 ~~~~~~~~~~~ 292 (325) T 1pot_A 282 SPEVANDKTLY 292 (325) T ss_dssp CHHHHTCTTTS T ss_pred CHHHHHCCCCC T ss_conf 99987286669 No 20 >>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A* (A:1-142,A:290-369) Probab=98.74 E-value=1.1e-08 Score=67.17 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=57.5 Q ss_pred CCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCC Q ss_conf 8510686541216316998899999999983999999997400210010687674210125544 Q gi|254780564|r 28 DIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYT 91 (107) Q Consensus 28 D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~~~~~~~~~ 91 (107) ..++.+-..+.+|.++|+|+++|.+||+||+|+|.|+.+++.+...|+++.+..++.+.+...+ T Consensus 143 ~~~~~~gg~~~~i~~~s~~~e~A~~fi~~l~s~e~q~~~~~~~g~~P~~~~~~~~~~~~~~p~~ 206 (222) T 3k01_A 143 GQGSPQGGWNLSVYAGSKNLDASYAFVKYMSSAKVQQQTTEKLSLLPTRTSVYEVPSVADNEMV 206 (222) T ss_dssp CCCEEEEEEEEEEBTTCSCHHHHHHHHHHHHSHHHHHHHHHHHCCCBSBGGGGGSHHHHTCHHH T ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHCHHHHCCHHH T ss_conf 8654124416898789968999999999975999999999985888774778749552148799 No 21 >>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A* (A:) Probab=98.72 E-value=1.3e-08 Score=66.95 Aligned_cols=53 Identities=6% Similarity=0.021 Sum_probs=47.8 Q ss_pred CCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCC Q ss_conf 9985106865412163169988999999999839999999974002100106876 Q gi|254780564|r 26 PKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGII 80 (107) Q Consensus 26 ~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~ 80 (107) |.+ |++..+...+|+++++|+++|++||+||+|+++|+.+++. +.+|+.++|. T Consensus 185 p~~-g~~~~~~~~~i~~~~~~~~~A~~Fi~~lls~e~Q~~~~~~-g~~p~~~~~~ 237 (237) T 2hxw_A 185 AIE-KDLVVYRTFNVIAKEGASKETQDFIAYLSSKEAKEIFKKY-GWREHHHHHH 237 (237) T ss_dssp ECC-TTTCCEEEEEEEECTTCCHHHHHHHHHTTSHHHHHHHHHT-TCBCC----- T ss_pred ECC-CCCEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHC-CCCCCCCCCC T ss_conf 559-9841797799998999979999999997899999999984-9986776679 No 22 >>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} (A:) Probab=98.69 E-value=2e-08 Score=65.82 Aligned_cols=79 Identities=24% Similarity=0.147 Sum_probs=61.7 Q ss_pred HHHHHHHHHCCCCCCE-EECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCC Q ss_conf 7899998514878535-504658998510686541216316998899999999983999999997400210010687674 Q gi|254780564|r 4 ASSVAIFKNHHSEVSV-SYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITN 82 (107) Q Consensus 4 ~yy~~~~k~~~~~~~v-~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~ 82 (107) .+.+..++....+... ...++.+.+.|+.....+.+|.++|+|+++|.+||+||+|+++|+.+++.....|+++.+... T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~eaA~~fi~~l~s~e~q~~~~~~~~~~p~~~~~~~~ 298 (344) T 1a99_A 219 AGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPL 298 (344) T ss_dssp HHHHHHHHHHHHHHTCSCCEEEECCTTCEEEEEEEEECBTTCSCHHHHHHHHHHHHSHHHHHHHHHHHCCEESBTTTGGG T ss_pred CHHHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 24689998765650358751231688761244545210046899899999999985799999999975888846888863 No 23 >>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermophilic protein, periplasmic binding protein; HET: MLR; 1.95A {Thermus thermophilus HB27} (A:) Probab=98.65 E-value=4.7e-08 Score=63.87 Aligned_cols=82 Identities=18% Similarity=0.184 Sum_probs=66.7 Q ss_pred HHHHHHHHHCCCCCCEEECCCCC---CCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCC Q ss_conf 78999985148785355046589---985106865412163169988999999999839999999974002100106876 Q gi|254780564|r 4 ASSVAIFKNHHSEVSVSYTPFLP---KDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGII 80 (107) Q Consensus 4 ~yy~~~~k~~~~~~~v~~~~f~~---~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~ 80 (107) .+.+..++....+..+...+..+ +..+......+.+|.++++|+++|.+||+||+|++.|..++......|+++.+. T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fi~~l~s~e~~~~~~~~~g~~p~~~~~~ 313 (386) T 2gh9_A 234 PWALGDYKKAKVDFGIAPFPVPPGAKNPWGPFLGVQGVVVNAYSKNKTQAVNFAKTLVTGRNLVAFNQAGGRIPVSKSAV 313 (386) T ss_dssp GGGHHHHHHTTCCEEEECCCCCTTCSSCCCCEEEEEEEEEBTTCTTHHHHHHHHHHHTSHHHHHHHHHHSCCEECBHHHH T ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEECCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHH T ss_conf 33566777654223332000001367887632321126850566663246799996257799999999709888878999 Q ss_pred CCCCC Q ss_conf 74210 Q gi|254780564|r 81 TNRKF 85 (107) Q Consensus 81 ~~~~~ 85 (107) ..... T Consensus 314 ~~~~~ 318 (386) T 2gh9_A 314 KQLEK 318 (386) T ss_dssp HHTTT T ss_pred HHHHH T ss_conf 98874 No 24 >>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A (A:) Probab=98.65 E-value=6.2e-08 Score=63.21 Aligned_cols=90 Identities=13% Similarity=0.119 Sum_probs=68.7 Q ss_pred HHHHHHHHHCCCC--CCEEECCCCCCC--CCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCC Q ss_conf 7899998514878--535504658998--510686541216316998899999999983999999997400210010687 Q gi|254780564|r 4 ASSVAIFKNHHSE--VSVSYTPFLPKD--IGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGI 79 (107) Q Consensus 4 ~yy~~~~k~~~~~--~~v~~~~f~~~D--~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV 79 (107) ..++..+...... +.+...|..+++ .+......+.+|.++++|+++|.+||+||+|+++|+.+.......|+.+.+ T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fi~~l~s~e~~~~~~~~~g~~p~~~~~ 337 (401) T 2heu_A 258 SWAITAINEQKPNFKIGTFMIPGKEKGQSLTVGAGDLAWSISATTKHPKEANAFVEYMTRPEVMQKYYDVDGSPTAIEGV 337 (401) T ss_dssp TTHHHHHHTTCCSSCEEEECBCCSSTTCCBEEECBSSEEEEBTTCSCHHHHHHHHHHHTSHHHHHHHHHHHCCCBCBTTC T ss_pred CHHHHHHHHHCCCCCCEEEECCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHH T ss_conf 26999998738765314785477765677343355221246789968999999999977999999999950987885335 Q ss_pred CCCCCCCCCCCCCC Q ss_conf 67421012554472 Q gi|254780564|r 80 ITNRKFNDQTYTNR 93 (107) Q Consensus 80 ~~~~~~~~~~~~~~ 93 (107) ..+...+.+..+.. T Consensus 338 ~~~~~~~~~~~~~~ 351 (401) T 2heu_A 338 KQAGEDSPLAGMTE 351 (401) T ss_dssp CCCCTTSTTHHHHT T ss_pred HHHCCCCHHHHHHH T ss_conf 54031737689998 No 25 >>2v84_A Spermidine/putrescine ABC transporter, periplasmic binding protein; polyamine binding, syphilis, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum} (A:1-131,A:251-327) Probab=98.61 E-value=1.2e-07 Score=61.63 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=49.6 Q ss_pred CCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCC Q ss_conf 1068654121631699889999999998399999999740021001068767 Q gi|254780564|r 30 GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIIT 81 (107) Q Consensus 30 G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~ 81 (107) |.++-..+..|.|+|||+++|.+||+|++++|.|..+++..+..|.++.+.. T Consensus 133 g~~~~~d~~~i~k~a~~~~~A~~fi~~~~~pe~~~~~~~~~~~~~~~~~a~~ 184 (208) T 2v84_A 133 ASPVYVDSFCIPKGARNRDLAHAFINFFLEPAHYAEFLDTFGFPSTIHREAA 184 (208) T ss_dssp TCEEEEEEEBEETTCSCHHHHHHHHHHHTSHHHHHHHHHHHTCCCSSBTTGG T ss_pred CCEEEECCHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHH T ss_conf 6236631321111689999999999996599999999997678984244553 No 26 >>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, structural genomics, PSI-2; HET: GTT CIT; 2.41A {Wolinella succinogenes} (A:) Probab=98.56 E-value=1.3e-07 Score=61.45 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=47.1 Q ss_pred HHHHHHHHHC--CCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCH----HHHHHHHHHHHCHHHHHHHHH Q ss_conf 7899998514--8785355046589985106865412163169988----999999999839999999974 Q gi|254780564|r 4 ASSVAIFKNH--HSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKK----SVATQFLRFLLLPIVQQYIAT 68 (107) Q Consensus 4 ~yy~~~~k~~--~~~~~v~~~~f~~~D~G~~v~vsgagI~k~a~n~----~~A~kfiefLlS~e~Q~~~a~ 68 (107) .+|....+.. ...+.+.+ |.| |.+..+.+.+|+++++++ ++|++||+||+|+|+|++++. T Consensus 174 ~~~~~~~~~~~~~~~~~~~~----p~~-~~~~~~~~i~i~~~a~~~~~~~~~A~~Fi~fllS~e~q~~~~~ 239 (242) T 3kn3_A 174 GTFIKYESNHKGKPPXVIVL----EGD-NTLKNFYSIXAVNPKRCEKADYKGAKQFIDWIVSEKXQAEIAN 239 (242) T ss_dssp HHHHHHHHHSCSSCSCEEEE----CCC-GGGCCEEEEEEECTTTCTTSCHHHHHHHHHHHHSHHHHHHHHT T ss_pred EEEEEEHHHHCCCCCEEEEC----CCC-CCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH T ss_conf 43342013434686289845----888-8640467899982766898786999999999779999999997 No 27 >>2gha_A Maltose ABC transporter, periplasmic maltose- binding protein; periplasmic binding protein, MBP, maltotriose, sugar binding protein; HET: MLR; 1.60A {Thermotoga maritima MSB8} PDB: 2ghb_A 2fnc_A* (A:1-111,A:253-336) Probab=98.54 E-value=8.8e-08 Score=62.38 Aligned_cols=59 Identities=14% Similarity=-0.034 Sum_probs=51.7 Q ss_pred CCCCCCCEEEEEEEEEECCCCCHHHHHHHHHH-HHCHHHHHHHHHHCCCCHHCCCCCCCC Q ss_conf 89985106865412163169988999999999-839999999974002100106876742 Q gi|254780564|r 25 LPKDIGNILCSTVGGIAESSKKKSVATQFLRF-LLLPIVQQYIATALGEYPIIKGIITNR 83 (107) Q Consensus 25 ~~~D~G~~v~vsgagI~k~a~n~~~A~kfief-LlS~e~Q~~~a~~~~eyPv~~gV~~~~ 83 (107) ..+..++++-..+.+|.++|+|+++|.+||+| |+|+++|+.+++.+...|+++.+.... T Consensus 112 ~~~~~~~~~gg~~~~i~~~s~~~~~A~~fi~~~lts~e~q~~~~~~~g~~P~~~s~~~~~ 171 (195) T 2gha_A 112 PGVPARPFVGVQGFMVNAKSPNKLLAIEFLTSFIAKKETMYRIYLGDPRLPSRKDVLELV 171 (195) T ss_dssp TTBCCCCEEEEEEEEEBTTCTTHHHHHHHHHHTTTSHHHHHHHHHHSCSEESBHHHHHHH T ss_pred CCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHH T ss_conf 898875302333357507883157899999875345999999998369887648799988 No 28 >>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Methanosarcina acetivorans} (A:1-85,A:255-296) Probab=98.54 E-value=8.2e-08 Score=62.57 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=36.3 Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCH Q ss_conf 865412163169988999999999839999999974002100 Q gi|254780564|r 33 LCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYP 74 (107) Q Consensus 33 v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyP 74 (107) .++.+++|+++|+|+++|++|++||+|+++|++|..-. -+| T Consensus 86 ~i~~~~~~~~~~~~~~~a~~f~~f~~s~~~q~i~~~~g-~~p 126 (127) T 3cfx_A 86 PIVYGVTIPNNAENSELATEFVALLLGETGQQIFIENG-QPP 126 (127) T ss_dssp CCEEEEECCTTCSCHHHHHHHHHHHHSHHHHHHHHHTT-CCC T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCC-CCC T ss_conf 26789999899999999999999978999999999859-915 No 29 >>2zxt_A Maltose-binding periplasmic protein, linker, mitochondrial intermembrane space import...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli} (A:1-112,A:252-333) Probab=98.52 E-value=1.1e-07 Score=61.78 Aligned_cols=78 Identities=12% Similarity=0.053 Sum_probs=62.0 Q ss_pred HHHHCCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHHHHCCCCHHCCCCCCCCCCC Q ss_conf 98514878535504658998510686541216316998899999999-9839999999974002100106876742101 Q gi|254780564|r 9 IFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLR-FLLLPIVQQYIATALGEYPIIKGIITNRKFN 86 (107) Q Consensus 9 ~~k~~~~~~~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfie-fLlS~e~Q~~~a~~~~eyPv~~gV~~~~~~~ 86 (107) ..+.++.-+++-+..-+.+.+++++-..+.+|.++|+|+++|.+||+ ||+|+|+|..+++.+...|+++.+..+...+ T Consensus 96 ~~~~dGk~ygiP~~~~t~~~~~~~~g~~~~~i~~~s~~~~~A~~fi~~~lts~e~q~~~~~~~g~~P~~~~~~~~~~~~ 174 (194) T 2zxt_A 96 AVRYNGKLIAYPIAVEAGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAK 174 (194) T ss_dssp TTBSSSSBCSEEEEEECGSCCCCEEEEEEEEEBTTCSCHHHHHHHHHHTTSSHHHHHHHHHHSCCCEESBHHHHGGGSS T ss_pred HCEECCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHH T ss_conf 3579999999988625699876455002566408997899999999998379999999997179886623430234443 No 30 >>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12} (A:1-112,A:252-333) Probab=98.48 E-value=1.1e-07 Score=61.78 Aligned_cols=78 Identities=12% Similarity=0.053 Sum_probs=61.3 Q ss_pred HHHHCCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHHHHCCCCHHCCCCCCCCCCC Q ss_conf 98514878535504658998510686541216316998899999999-9839999999974002100106876742101 Q gi|254780564|r 9 IFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLR-FLLLPIVQQYIATALGEYPIIKGIITNRKFN 86 (107) Q Consensus 9 ~~k~~~~~~~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfie-fLlS~e~Q~~~a~~~~eyPv~~gV~~~~~~~ 86 (107) ..+.++.-+++-+..-+.+.+++++-..+.+|.++|+|+++|.+||+ ||+|+|+|..+++.+...|+++.+..+...+ T Consensus 96 ~~~~dGk~ygiP~~~~t~~~~~~~~g~~~~~i~~~s~~~~~A~~fi~~~lts~e~q~~~~~~~g~~P~~~~~~~~~~~~ 174 (194) T 3f5f_A 96 AVRYNGKLIAYPIAVEAGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAK 174 (194) T ss_dssp HTEETTEECSEEEEEECTBCCCCEEEEEEEEEBTTCTTHHHHHHHHHHTTSSHHHHHHHHHHSCCSEESBHHHHHHHTT T ss_pred HCEECCEEEEEEEECCECCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 4679998999998634499875267007999989898899999999998359999999998189886635540355654 No 31 >>3h3g_A Fusion protein of maltose-binding periplasmic domain and human parathyroid hormone...; GPCR, extracellular domain, PTHRP, PTH, PThr1, periplasm, sugar transport, transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A* 3ehs_A* 3ehu_A* 3eht_A* (A:1-114,A:254-335) Probab=98.45 E-value=1.8e-07 Score=60.76 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=58.1 Q ss_pred HCCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHHHHCCCCHHCCCCCCCCCCC Q ss_conf 14878535504658998510686541216316998899999999-9839999999974002100106876742101 Q gi|254780564|r 12 NHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLR-FLLLPIVQQYIATALGEYPIIKGIITNRKFN 86 (107) Q Consensus 12 ~~~~~~~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfie-fLlS~e~Q~~~a~~~~eyPv~~gV~~~~~~~ 86 (107) .++.-+++-+..=+.+.+++.+-..+.+|.|+|+|+++|.+||+ ||+|++.|..+++.....|+++.+..+...+ T Consensus 101 ~dG~~ygiP~~~~t~~~~~~~~g~~~~~i~~~s~~~e~A~~fi~~~l~s~e~~~~~~~~~g~~P~~~~~~~~~~~~ 176 (196) T 3h3g_A 101 YNGKLIAYPIAVEAGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAK 176 (196) T ss_dssp ETTEECSEEEEEECTBCCCCEEEEEEEEEBTTCSCHHHHHHHHHHTTTSHHHHHHHHHHSCCCEESBHHHHHHHTT T ss_pred ECCEEEEEEEECEECCCCCCEECCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHCCHHHHH T ss_conf 9998999988540589986444342699989997899999999998369999999998179886634540224443 No 32 >>3kjt_A Maltose-binding periplasmic protein; alternate conformation, sugar transport, transport, transport protein; 1.50A {Escherichia coli k-12} PDB: 3hpi_A 1anf_A* 1dmb_A* 1ez9_A* 1jw4_A 1jw5_A* 1lls_A 1omp_A 2d21_A 2r6g_E* 3mbp_A* 4mbp_A* 1fqa_A* 1fqb_A* 1fqc_A* 1fqd_A* 1ezo_A 1ezp_A 2h25_A 2klf_A ... (A:1-114,A:254-335) Probab=98.44 E-value=1.6e-07 Score=61.01 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=60.2 Q ss_pred HHHHCCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHHHHCCCCHHCCCCCCCCC Q ss_conf 98514878535504658998510686541216316998899999999-98399999999740021001068767421 Q gi|254780564|r 9 IFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLR-FLLLPIVQQYIATALGEYPIIKGIITNRK 84 (107) Q Consensus 9 ~~k~~~~~~~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfie-fLlS~e~Q~~~a~~~~eyPv~~gV~~~~~ 84 (107) .++..+.-.++-+..-..+..++++-..+.+|.++|+|+++|.+||+ ||+|+|.|+.++......|+++.+-.... T Consensus 98 ~~~~~Gk~ygiP~~~~t~~~~~~~~g~~~~~i~~~sk~~~~A~~fi~~~l~~~e~q~~~~~~~g~~P~~~~~~~d~~ 174 (196) T 3kjt_A 98 AVRYNGKLIAYPIAVYAGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEEL 174 (196) T ss_dssp HTEETTEECSEEEEEECTBCCCCEEEEEEEEEBTTCTTHHHHHHHHHHTTSSHHHHHHHHHHSCCCEESBHHHHHHH T ss_pred HCEECCEEEEEEEECCCCCCCCCEECCCHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHCCHHH T ss_conf 36599989998531356998764002011002457847999999999996799999999971798865334300444 No 33 >>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A (A:1-85,A:254-295) Probab=98.42 E-value=2.9e-07 Score=59.61 Aligned_cols=39 Identities=10% Similarity=0.103 Sum_probs=35.1 Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCC Q ss_conf 865412163169988999999999839999999974002 Q gi|254780564|r 33 LCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALG 71 (107) Q Consensus 33 v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~ 71 (107) -++.+++|+|+|+|+++|++|++||+|+++|++|..--| T Consensus 86 pi~~~~~i~~~s~~~~~A~~f~~fl~s~~~q~i~~~~Gf 124 (127) T 3cij_A 86 PIVYGITIPKNAENRELAVEFVKLVISEEGQEILRELGQ 124 (127) T ss_dssp CCEEEEECCTTCSCHHHHHHHHHHHHSHHHHHHHHHTTC T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCC T ss_conf 367799998999999999999999789999999998299 No 34 >>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli} (A:1-127,A:263-348) Probab=98.41 E-value=1.9e-07 Score=60.54 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=52.7 Q ss_pred CCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHHHHCCCCHHCCCCCCCC Q ss_conf 4658998510686541216316998899999999-9839999999974002100106876742 Q gi|254780564|r 22 TPFLPKDIGNILCSTVGGIAESSKKKSVATQFLR-FLLLPIVQQYIATALGEYPIIKGIITNR 83 (107) Q Consensus 22 ~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfie-fLlS~e~Q~~~a~~~~eyPv~~gV~~~~ 83 (107) +...-+..++.+-..+.+|.++|+|+++|.+||+ ||+|+|.|+.+++.+...|..+.+.... T Consensus 128 p~~~g~~~~~~~g~~~~~i~~~s~~k~~A~~fi~~~l~~~e~q~~~~~~~g~~p~~~~~~~~~ 190 (213) T 2vgq_A 128 PTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEE 190 (213) T ss_dssp CBBTTBCCCCEEEEEEEEEBTTCSCHHHHHHHHHHTTSSHHHHHHHHHHSCCCEESBHHHHHH T ss_pred CCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHH T ss_conf 677778876401212578768997899999999999579999999997189886642431144 No 35 >>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A (A:1-90,A:255-296) Probab=98.40 E-value=3.9e-07 Score=58.91 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=36.2 Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCC Q ss_conf 8654121631699889999999998399999999740021 Q gi|254780564|r 33 LCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGE 72 (107) Q Consensus 33 v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~e 72 (107) .++.+++|+++|+|+++|++|++||+|+++|++|..--|+ T Consensus 91 pi~~~~a~~~~~~~~~~a~~f~~fl~s~~~q~i~~~~Gf~ 130 (132) T 3cg1_A 91 PIVYGVTVLKDAPNREVAIEFLRYLLSENGKRIFEKNHQD 130 (132) T ss_dssp CCEEEEEECTTCTTHHHHHHHHHHHHSHHHHHHHHHTTCC T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCC T ss_conf 2446899989998999999999997899999999983987 No 36 >>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} (B:1-117,B:252-337) Probab=98.40 E-value=2.1e-07 Score=60.39 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=52.5 Q ss_pred CCCC-CCCCCEEEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHHHHCCCCHHCCCCCCCC Q ss_conf 6589-98510686541216316998899999999-9839999999974002100106876742 Q gi|254780564|r 23 PFLP-KDIGNILCSTVGGIAESSKKKSVATQFLR-FLLLPIVQQYIATALGEYPIIKGIITNR 83 (107) Q Consensus 23 ~f~~-~D~G~~v~vsgagI~k~a~n~~~A~kfie-fLlS~e~Q~~~a~~~~eyPv~~gV~~~~ 83 (107) |-.+ +..++++-..+.+|.++|+|+++|.+||+ ||+|+++|+.+...+...|+++.+.... T Consensus 118 P~~~g~~~~~~~g~~~~~i~~~s~~~~~A~~fi~~~l~~~e~q~~~~~~~g~~P~~~~~~~~~ 180 (203) T 2nvu_B 118 PTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEE 180 (203) T ss_dssp CBCSSSCCCCCEEEEEEEEBSSCSTTHHHHHHHHTTTSSHHHHHHHHTTC----CCBHHHHTC T ss_pred CCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHH T ss_conf 787999875077007999989898899999999998259999999998279886626664687 No 37 >>1mg1_A Protein (HTLV-1 GP21 ectodomain/maltose-binding protein chimera); human T cell leukemia virus type 1, envelope protein; HET: MAL; 2.50A {Human t-lymphotropic virus 1} (A:1-108,A:252-329) Probab=98.34 E-value=2.9e-07 Score=59.59 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=50.6 Q ss_pred CCCCCEEEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHHHHCCCCHHCCCCCCCC Q ss_conf 98510686541216316998899999999-9839999999974002100106876742 Q gi|254780564|r 27 KDIGNILCSTVGGIAESSKKKSVATQFLR-FLLLPIVQQYIATALGEYPIIKGIITNR 83 (107) Q Consensus 27 ~D~G~~v~vsgagI~k~a~n~~~A~kfie-fLlS~e~Q~~~a~~~~eyPv~~gV~~~~ 83 (107) -+.|+++-..+.+|.++|+|+++|.+||+ ||+|+++|+.++......|+++.+.... T Consensus 106 ~~~~~~~g~~~~~i~~~s~~~~~A~~fi~~~lt~~e~~~~~~~~~g~~P~~~~~~~~~ 163 (186) T 1mg1_A 106 VEAKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEE 163 (186) T ss_dssp EECCCEEEEEEEEEETTCSCHHHHHHHHHTTTSSHHHHHHHHTTSCCCEESBHHHHHT T ss_pred ECECCCCCCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHH T ss_conf 1107655640588867898899999999999579999999997079886633421055 No 38 >>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A (A:1-117,A:285-340) Probab=98.27 E-value=7.4e-07 Score=57.40 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=43.9 Q ss_pred CCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCC Q ss_conf 5106865412163169988999999999839999999974002100106876 Q gi|254780564|r 29 IGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGII 80 (107) Q Consensus 29 ~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~ 80 (107) -|.-+...+.+|.++|||+++|.+||+||+|++.|..+...+...|..+.+. T Consensus 112 ygiP~~~~~~~i~~~sk~~~~A~~fi~fl~~~~~~~~~~~~~~~~P~~~~~~ 163 (173) T 2uvj_A 112 NGIPISAQMLSIGKSTKHPQESAMLINFLLNSKEGVEALGLERGVPLSATAV 163 (173) T ss_dssp CCEEEEEEEEEEBTTCSCHHHHHHHHHHHHTSHHHHHHHTTTTSSCCSHHHH T ss_pred EEEECCCCCEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHH T ss_conf 4552125320204568889999999999869899999999749988767787 No 39 >>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli} (A:1-112,A:256-332) Probab=98.15 E-value=1.5e-06 Score=55.67 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=45.9 Q ss_pred CCCCCEEEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHH-HHCCCCHHCCCCCC Q ss_conf 98510686541216316998899999999-983999999997-40021001068767 Q gi|254780564|r 27 KDIGNILCSTVGGIAESSKKKSVATQFLR-FLLLPIVQQYIA-TALGEYPIIKGIIT 81 (107) Q Consensus 27 ~D~G~~v~vsgagI~k~a~n~~~A~kfie-fLlS~e~Q~~~a-~~~~eyPv~~gV~~ 81 (107) -+.+.++-..+.+|.++|+|+++|.+||+ ||+|+++|..+. +.....|.++.+.. T Consensus 110 ~~t~~~~G~~~~~i~~~s~~k~~A~~fi~~~l~s~e~q~~~~~~~~g~~P~~~~~~~ 166 (189) T 1y4c_A 110 VEAKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEE 166 (189) T ss_dssp EECCCEEEEEEEEEBTTCSCHHHHHHHHHHTTSSHHHHHHHHHHSCCCEESBHHHHH T ss_pred CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHH T ss_conf 566654564035666899889999999999957999999999807988674243035 No 40 >>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} (A:1-80,A:186-231) Probab=97.95 E-value=1.3e-05 Score=50.67 Aligned_cols=41 Identities=24% Similarity=0.226 Sum_probs=35.3 Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCH Q ss_conf 65412163169988999999999839999999974002100 Q gi|254780564|r 34 CSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYP 74 (107) Q Consensus 34 ~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyP 74 (107) ..-.++|+++++|+++|++|++||.|+++|++|..--|.-| T Consensus 85 i~~~~~~~~~~~~~~~a~~f~~fl~s~~a~~i~~~~Gf~~~ 125 (126) T 1atg_A 85 IVQQAVITKSTAEKANAEQFMSWMKGPKAVAIIKAAGYVLP 125 (126) T ss_dssp CEEEEEEBTTCSCHHHHHHHHHHTTSHHHHHHHHHTTCBCC T ss_pred EEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCC T ss_conf 66769998799998999999999789999999998489899 No 41 >>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, ION-dipole interactions, electrostatics; 2.16A {Mycobacterium tuberculosis H37RV} (A:) Probab=97.86 E-value=2.8e-06 Score=54.29 Aligned_cols=44 Identities=7% Similarity=0.116 Sum_probs=38.1 Q ss_pred EEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCC Q ss_conf 21631699889999999998399999999740021001068767 Q gi|254780564|r 38 GGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIIT 81 (107) Q Consensus 38 agI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~ 81 (107) .++-++++|+++|++||+||+|+|+|+.+.+.+.-.|+.+.+.. T Consensus 296 ~~~~~~~~~~~aA~~Fl~f~~s~e~q~~~~~~~G~iP~~~~~~~ 339 (350) T 1pc3_A 296 NNRQKDAATAQTLQAFLHWAITDGNKASFLDQVHFQPLPPAVVK 339 (350) T ss_dssp ESBCSSHHHHHHHHHHHHHHTTGGGSHHHHHHHTCBCCCHHHHH T ss_pred ECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEECCHHHHH T ss_conf 56789645579999999998584117877886897579999999 No 42 >>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A (A:1-103,A:211-253) Probab=97.67 E-value=4.3e-05 Score=47.87 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=42.4 Q ss_pred CCHHHHHHHHHCCCCCCEEECCCCCCCCCCEEEEE-EEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCC Q ss_conf 44789999851487853550465899851068654-12163169988999999999839999999974002 Q gi|254780564|r 2 INASSVAIFKNHHSEVSVSYTPFLPKDIGNILCST-VGGIAESSKKKSVATQFLRFLLLPIVQQYIATALG 71 (107) Q Consensus 2 ~n~yy~~~~k~~~~~~~v~~~~f~~~D~G~~v~vs-gagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~ 71 (107) .+.+++.++...+-=-+.... .. +.++..++ +++|+|+++|+ +|.+|++||.|+++|++|+..-| T Consensus 78 ~d~~~~~~l~~~Gll~pl~~~-~i---~nN~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~g~ 143 (146) T 3gzg_A 78 ADLEWMDYLQQHGLVLPAQRH-NL---LGNHDAIVYPVAALKNSNNP-ATAAFVSWLGSKPAKAIFARRGF 143 (146) T ss_dssp SSHHHHHHHHHTTSSCGGGEE-EE---EEESCCEEEEEEECTTCCCT-THHHHHHHTTSHHHHHHHHHTTC T ss_pred CCHHHHHHHHHCCEEEECCCC-CC---CCCCEEEEEEEEEECCCCCH-HHHHHHHHHCCHHHHHHHHHCCC T ss_conf 424557887530201210222-22---23356878769998899999-99999999789999999998396 No 43 >>2z8f_A Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A* (A:1-130,A:281-345) Probab=97.62 E-value=7.2e-05 Score=46.67 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=44.6 Q ss_pred EECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCC Q ss_conf 5046589985106865412163169988999999999839999999974002100106876742 Q gi|254780564|r 20 SYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNR 83 (107) Q Consensus 20 ~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~ 83 (107) ..+....+..++..==++.+|.|+|+|+++|.+||+||++++-+-. ...-||-++.-.... T Consensus 124 giP~~~~~~~~~~~GGs~l~v~~~sk~~~~A~~f~~~~~~~~~~~~---~~g~~P~~~~~~~~~ 184 (195) T 2z8f_A 124 GLPQDTGAGKTGPDGGSAVAVLKNSKHPKEAMEFLDWFNTQVPDLV---SQGLVPAATTEDAET 184 (195) T ss_dssp EEECBCCTTCBCBCCCEEEEEBTTCSCHHHHHHHHHHHTTCHHHHH---HTTCCBSBCSSCCCC T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCCCHHH T ss_conf 9997225775344566421256899489999999999970899999---819988752000222 No 44 >>1amf_A Molybdate transport protein MODA; periplasmic, binding protein; 1.75A {Escherichia coli} (A:1-83,A:191-233) Probab=97.52 E-value=0.00017 Score=44.67 Aligned_cols=66 Identities=6% Similarity=-0.008 Sum_probs=42.4 Q ss_pred CHHHHHHHHHCCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCC Q ss_conf 4789999851487853550465899851068654121631699889999999998399999999740021 Q gi|254780564|r 3 NASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGE 72 (107) Q Consensus 3 n~yy~~~~k~~~~~~~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~e 72 (107) +.+++.+++..+-=.+.....+ ++ .+-..+..+||+++++|+ .|+.|++||+|+++|+.|..--|+ T Consensus 59 ~~~~~~~l~~~Gli~~~~~~~l-~~--n~~~i~~~~~~~~~~~~~-~a~~f~~fl~s~~a~~i~~~~Gf~ 124 (126) T 1amf_A 59 DQKWMDYAVDKKAIDTATRQTL-LG--NHKKVEYPVAVVEGHNNA-TVKAFYDYLKGPQAAEIFKRYGFT 124 (126) T ss_dssp SHHHHHHHHHTTCBCGGGCEEE-EE--ESCCEEEEEEEBTTCCSH-HHHHHHHHHTSHHHHHHHHHTTCE T ss_pred CHHHHHHHHHHCCCCCCCCEEE-EC--CCEEEEEEEEEECCCCCH-HHHHHHHHHCCHHHHHHHHHCCCE T ss_conf 3456899887247786551232-11--261768889998799989-999999997899999999984928 No 45 >>1j1n_A ALGQ2; alginate, suger binding protein; HET: BEM MAV LGU; 1.60A {Sphingomonas SP} (A:1-134,A:304-397) Probab=97.25 E-value=0.00035 Score=42.97 Aligned_cols=40 Identities=10% Similarity=0.029 Sum_probs=34.7 Q ss_pred CCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHH Q ss_conf 1068654121631699889999999998399999999740 Q gi|254780564|r 30 GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATA 69 (107) Q Consensus 30 G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~ 69 (107) -.....++.+|.++|||++.|.+||+||.|+|+|..+.-. T Consensus 140 ~~~~~~~~~~i~~~~k~pe~~~~~ld~l~s~e~~~l~~~G 179 (228) T 1j1n_A 140 RQKVRPDGWAITVKNKNPVETIKFFDFYFSRPGRDISNFG 179 (228) T ss_dssp CCSSCSCEEEEBTTCSCHHHHHHHHHHTTSHHHHHHHHHC T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHCC T ss_conf 4434543999989999999999999997398999999628 No 46 >>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} (A:1-112,A:253-309) Probab=96.58 E-value=0.0027 Score=38.18 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=42.0 Q ss_pred CCCCCEEEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHHHHCC-CCHHCC Q ss_conf 98510686541216316998899999999-9839999999974002-100106 Q gi|254780564|r 27 KDIGNILCSTVGGIAESSKKKSVATQFLR-FLLLPIVQQYIATALG-EYPIIK 77 (107) Q Consensus 27 ~D~G~~v~vsgagI~k~a~n~~~A~kfie-fLlS~e~Q~~~a~~~~-eyPv~~ 77 (107) +.+-.+|=+-|++|-..|+|+++|++||+ ||+++|+|..+-+... +-|.++ T Consensus 113 ~~~~~f~gv~~~~~~~~s~n~~~a~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (169) T 1hsj_A 113 QPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALK 165 (169) T ss_dssp BCCCCCBEEEEEEEBSSCSCHHHHHHHHHHTTTSHHHHHHHHHHSCCCEESBH T ss_pred CCCCEECCCCCEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHH T ss_conf 87622214230343079968999999999996799999999981798875443 No 47 >>3iot_A Maltose-binding protein, huntingtin fusion protein; HTT-EX1, HD, sugar transport, transport, apoptosis, cytoplasm, disease mutation; 3.50A {Escherichia coli k-12} PDB: 3ior_A 3iou_A 3iov_A 3iow_A (A:1-112,A:253-313) Probab=96.04 E-value=0.01 Score=35.06 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=41.6 Q ss_pred CCCCCEEEEEEEEEECCCCCHHHHHHHH-HHHHCHHHHHHHHHH-CCCCHHCC Q ss_conf 9851068654121631699889999999-998399999999740-02100106 Q gi|254780564|r 27 KDIGNILCSTVGGIAESSKKKSVATQFL-RFLLLPIVQQYIATA-LGEYPIIK 77 (107) Q Consensus 27 ~D~G~~v~vsgagI~k~a~n~~~A~kfi-efLlS~e~Q~~~a~~-~~eyPv~~ 77 (107) +.+..+|=+-|++|-..|+|+++|.+|+ +||+++|+|..+-.. ..+-|.++ T Consensus 113 ~~~~~f~gv~~~~~~~~s~n~~~a~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (173) T 3iot_A 113 QPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALK 165 (173) T ss_dssp EECCCEEEEEEEEEBTTCSCHHHHHHHHHHTTSSHHHHHHHHHHSCCSEESBH T ss_pred CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHH T ss_conf 87641246515888667876899999999984799999999970898866334 No 48 >>1r6z_P Chimera of maltose-binding periplasmic protein and argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} (P:1-113,P:254-314) Probab=96.01 E-value=0.01 Score=34.99 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=40.6 Q ss_pred CCCCCEEEEEEEEEECCCCCHHHHHHHH-HHHHCHHHHHHHHHHCCC-CHHC Q ss_conf 9851068654121631699889999999-998399999999740021-0010 Q gi|254780564|r 27 KDIGNILCSTVGGIAESSKKKSVATQFL-RFLLLPIVQQYIATALGE-YPII 76 (107) Q Consensus 27 ~D~G~~v~vsgagI~k~a~n~~~A~kfi-efLlS~e~Q~~~a~~~~e-yPv~ 76 (107) +..--+|=|-|++|-..|+|+++|.+|+ +||+++|+|..+-+..-. -|.+ T Consensus 114 ~~~~pfvgv~~~~~~~~~~n~~~a~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (174) T 1r6z_P 114 QPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVAL 165 (174) T ss_dssp BCCCCEEEEEEEEEBTTCTTHHHHHHHHHHTTTSHHHHHHHHHHSCCSEESB T ss_pred CCCCCEEECEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCH T ss_conf 9886455022789878997899999999999679999999997179786622 No 49 >>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii} (A:1-86,A:253-292) Probab=95.16 E-value=0.013 Score=34.48 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=28.0 Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHH Q ss_conf 65412163169988999999999839999999974 Q gi|254780564|r 34 CSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIAT 68 (107) Q Consensus 34 ~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~ 68 (107) .+..++|+|+|+|+++|+.|++||. ++|+.|.. T Consensus 88 ~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~ 120 (126) T 3cfz_A 88 IVYGMTVPTNAPHKKEAIEFVKFVL--GHPEVLEN 120 (126) T ss_dssp CEEEEECCTTCTTHHHHHHHHHHHH--HCTHHHHT T ss_pred EEEEEEEECCCCCHHHHHHHHHHHC--CHHHHHHH T ss_conf 5578999899999999999999984--83999997 No 50 >>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} (A:1-112,A:258-313) Probab=95.16 E-value=0.019 Score=33.62 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=38.8 Q ss_pred CCCCCCCEEEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHHHH Q ss_conf 8998510686541216316998899999999-98399999999740 Q gi|254780564|r 25 LPKDIGNILCSTVGGIAESSKKKSVATQFLR-FLLLPIVQQYIATA 69 (107) Q Consensus 25 ~~~D~G~~v~vsgagI~k~a~n~~~A~kfie-fLlS~e~Q~~~a~~ 69 (107) .|-..+++|-+-++||-..|+|+++|..||| ||+++++...+-.. T Consensus 106 iP~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (168) T 1mh3_A 106 YPIAVEAFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKD 151 (168) T ss_dssp EEEEEECEEEEEEEEEBTTCSCHHHHHHHHHHTTSSHHHHHHHHHH T ss_pred EEEEECCEECCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHC T ss_conf 9876224223327999788998999999999984799999999970 No 51 >>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} (A:1-112,A:257-309) Probab=94.60 E-value=0.056 Score=31.07 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=34.3 Q ss_pred CEEEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHHHH Q ss_conf 0686541216316998899999999-98399999999740 Q gi|254780564|r 31 NILCSTVGGIAESSKKKSVATQFLR-FLLLPIVQQYIATA 69 (107) Q Consensus 31 ~~v~vsgagI~k~a~n~~~A~kfie-fLlS~e~Q~~~a~~ 69 (107) -+|-+-|++|-..|+|+++|..||+ ||++++++..+-.. T Consensus 113 p~~g~~~~~~~~~~~~~~~a~~f~~~~~~~~~~~~~~~~~ 152 (165) T 3dm0_A 113 PFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKD 152 (165) T ss_dssp CEEEEEEEEEBTTCSCHHHHHHHHHHTTTSHHHHHHHHHH T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 5425332343035665256668898866569999999860 No 52 >>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} (A:1-85,A:220-275) Probab=94.03 E-value=0.027 Score=32.78 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=27.0 Q ss_pred CHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCC Q ss_conf 8899999999983999999997400210010687 Q gi|254780564|r 46 KKSVATQFLRFLLLPIVQQYIATALGEYPIIKGI 79 (107) Q Consensus 46 n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV 79 (107) ..+.|+.||+||.|+++|++++.- +-.|+.+.| T Consensus 101 tr~vA~aYl~yLys~eaQ~i~A~~-~yRp~~~~v 133 (141) T 1sbp_A 101 TKAVAEAYLKYLYSPEGQEIAAKN-FYRPRDADV 133 (141) T ss_dssp CHHHHHHHHHGGGSHHHHHHHHHT-TCEESCHHH T ss_pred CHHHHHHHHHHHCCHHHHHHHHHC-CCCCCCCCC T ss_conf 999999999996299999999975-986188231 No 53 >>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae} (A:1-143,A:308-349) Probab=84.63 E-value=1.3 Score=23.75 Aligned_cols=39 Identities=33% Similarity=0.421 Sum_probs=30.6 Q ss_pred EEEEEEEECCCCCH----HHHHHHHHHHHCHHHHHHHHHHCCC Q ss_conf 65412163169988----9999999998399999999740021 Q gi|254780564|r 34 CSTVGGIAESSKKK----SVATQFLRFLLLPIVQQYIATALGE 72 (107) Q Consensus 34 ~vsgagI~k~a~n~----~~A~kfiefLlS~e~Q~~~a~~~~e 72 (107) ...|+||.-+++.. .+|..|+.|.+|+++|+.+-+.... T Consensus 141 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (185) T 2w7y_A 141 KQNGGGITISSKXSEAKQKLALEFLKYXTSDDVQKVIFEKVGA 183 (185) T ss_dssp HHTCCCEEEBSSSCHHHHHHHHHHHHHHTSHHHHHHHHHTSCS T ss_pred HHCCCEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCC T ss_conf 7356415776207703479999999997599999999997098 No 54 >>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A* 3g7v_A* (A:42-110,A:251-282) Probab=77.78 E-value=2.9 Score=21.79 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=23.6 Q ss_pred CCEEEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 1068654121631699889999999998 Q gi|254780564|r 30 GNILCSTVGGIAESSKKKSVATQFLRFL 57 (107) Q Consensus 30 G~~v~vsgagI~k~a~n~~~A~kfiefL 57 (107) --++-+-.+||-..++|+++|+.|+|-. T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (101) T 3csg_A 73 KPFVGVLSAGINAASPNKELAKEFLENY 100 (101) T ss_dssp CCEEEEEEEEEBTTCTTHHHHHHHHHHT T ss_pred CCEEEECEEECCCCCCCHHHHHHHHHHH T ss_conf 6301110011238885399999999999 No 55 >>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} (A:113-157,A:206-256,A:310-333) Probab=70.31 E-value=0.027 Score=32.77 Aligned_cols=51 Identities=6% Similarity=-0.030 Sum_probs=41.1 Q ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCC-CEEEEEEEEEECCCCCHHHHHHHH Q ss_conf 789999851487853550465899851-068654121631699889999999 Q gi|254780564|r 4 ASSVAIFKNHHSEVSVSYTPFLPKDIG-NILCSTVGGIAESSKKKSVATQFL 54 (107) Q Consensus 4 ~yy~~~~k~~~~~~~v~~~~f~~~D~G-~~v~vsgagI~k~a~n~~~A~kfi 54 (107) +...+.++..+.++++...|-.++..+ .+......+|.++|+|+++|.+|| T Consensus 69 ~w~~~~~~~~~~~~g~~~~P~~~~~~~~~~~~~~~~~i~~~s~~~~~A~~fv 120 (120) T 3dm0_A 69 PWAWSNIDTSAVNYGVTVLPTFKGQPSKELAKDPRIAATMENAQKGEIMPNI 120 (120) T ss_dssp GGGHHHHHHTTCCEEEECCCEETTEECCHHTTSHHHHHHHHHHHHSEECCCS T ss_pred HHHHHHHHHCCCCEEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHCCCCCCC T ss_conf 6788887740897799999964899887332085799999998625678887 No 56 >>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfuration; HET: PLP; 2.30A {Arabidopsis thaliana} (A:327-464) Probab=68.33 E-value=8.3 Score=19.33 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=44.2 Q ss_pred CHHHHHHHHHCCCCCCEEECCCCCCCCCC-----EEEEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 47899998514878535504658998510-----686541216316998899999999983 Q gi|254780564|r 3 NASSVAIFKNHHSEVSVSYTPFLPKDIGN-----ILCSTVGGIAESSKKKSVATQFLRFLL 58 (107) Q Consensus 3 n~yy~~~~k~~~~~~~v~~~~f~~~D~G~-----~v~vsgagI~k~a~n~~~A~kfiefLl 58 (107) |.--++.++..|+.|..++.|..+...++ .+.-.|+.+.---...+.|.+|++-|- T Consensus 12 nA~~la~~L~~hp~V~~V~yPgl~~~p~~~l~~~~~~~ggg~~~~~~~~~~~~~~f~~~L~ 72 (138) T 1ibj_A 12 NARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTK 72 (138) T ss_dssp HHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCS T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCC T ss_conf 9999999986089762655665331035999985699940899999699999999997069 No 57 >>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G- protein coupled receptor, glycoprotein, membrane, polymorphism, receptor; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A (B:) Probab=40.07 E-value=13 Score=18.34 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=12.0 Q ss_pred HHHHHHHHHHHHCHH Q ss_conf 899999999983999 Q gi|254780564|r 47 KSVATQFLRFLLLPI 61 (107) Q Consensus 47 ~~~A~kfiefLlS~e 61 (107) ...|+.||+||.+-+ T Consensus 16 ~~aakdFv~WL~n~k 30 (31) T 3iol_B 16 GQAAKEFIAWLVKGR 30 (31) T ss_dssp HHHHHHHHHHHHCC- T ss_pred HHHHHHHHHHHHCCC T ss_conf 999999999998068 No 58 >>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} (A:) Probab=33.66 E-value=24 Score=16.86 Aligned_cols=20 Identities=10% Similarity=0.006 Sum_probs=14.3 Q ss_pred HHHHHHHHHHHHCHHHHHHH Q ss_conf 89999999998399999999 Q gi|254780564|r 47 KSVATQFLRFLLLPIVQQYI 66 (107) Q Consensus 47 ~~~A~kfiefLlS~e~Q~~~ 66 (107) ...|+.||.||.+-...+-+ T Consensus 16 ~~aakdFv~WL~~~k~~r~~ 35 (39) T 1jrj_A 16 EEAVRLFIEWLKNGGPSSGA 35 (39) T ss_dssp HHHHHHHHHHHHTTGGGSSS T ss_pred HHHHHHHHHHHHCCCCCCCC T ss_conf 99999999999828989899 No 59 >>3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A {Human herpesvirus 8 type M} (A:58-132) Probab=25.81 E-value=44 Score=15.44 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.3 Q ss_pred HHHHHHCHHHHHHHHHHC Q ss_conf 999983999999997400 Q gi|254780564|r 53 FLRFLLLPIVQQYIATAL 70 (107) Q Consensus 53 fiefLlS~e~Q~~~a~~~ 70 (107) |=.||-|+++|+.+++.. T Consensus 2 FS~FLr~~~Vq~fia~~~ 19 (75) T 3fhd_A 2 FSKFLKHAKVRDWCAQAK 19 (75) T ss_dssp HHHHHHSHHHHHHHTSTT T ss_pred HHHHHCCHHHHHHHHCCC T ss_conf 998855877778885177 No 60 >>1qqp_4 FMDV, protein (genome polyprotein); heparan sulphate, virus-receptor interactions/protein-carbohydrate interactions; HET: IDX SGN IDS; 1.90A {Foot-and-mouth disease virus} (4:) Probab=25.65 E-value=12 Score=18.43 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=12.4 Q ss_pred CCCHHHHHHHHHCCC Q ss_conf 944789999851487 Q gi|254780564|r 1 MINASSVAIFKNHHS 15 (107) Q Consensus 1 ~~n~yy~~~~k~~~~ 15 (107) +||+|||-++-|.-+ T Consensus 21 IvnNyYMQqYQNSiD 35 (85) T 1qqp_4 21 IINNYYMQQYQNSMD 35 (85) T ss_dssp CSCCSSCHHHHSCCC T ss_pred HHHHHHHHHHHCCCC T ss_conf 476899998851237 No 61 >>3e6g_A Xometc, cystathionine gamma-lyase-like protein; bacterial blight, cystathionine lyase, reverse transsulfuration pathway; 2.80A {Xanthomonas oryzae PV} (A:263-400) Probab=25.63 E-value=52 Score=15.02 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=37.3 Q ss_pred CHHHHHHHHHCCCCCCEEECCCCCCCCCCEE-----EEEEEEEE-CCCCCHHHHHHHHHHHH Q ss_conf 4789999851487853550465899851068-----65412163-16998899999999983 Q gi|254780564|r 3 NASSVAIFKNHHSEVSVSYTPFLPKDIGNIL-----CSTVGGIA-ESSKKKSVATQFLRFLL 58 (107) Q Consensus 3 n~yy~~~~k~~~~~~~v~~~~f~~~D~G~~v-----~vsgagI~-k~a~n~~~A~kfiefLl 58 (107) |..-++.++..|+.|..++.|..+...++-. .-.|+++. .-....+.|.+|++-|- T Consensus 12 nA~~la~~L~~~p~V~~V~yP~l~~~~~~~~~~~~~~~gg~~~sf~l~~~~~~~~~f~~~l~ 73 (138) T 3e6g_A 12 NALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTE 73 (138) T ss_dssp HHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCS T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCC T ss_conf 99999998764897110236789998469999862799764589999389999999997088 No 62 >>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... (A:154-258) Probab=23.60 E-value=57 Score=14.80 Aligned_cols=37 Identities=5% Similarity=0.025 Sum_probs=24.5 Q ss_pred CCCHHHHHHHHHHHHCHHHHHHHHH---HCCCCHHCCCCC Q ss_conf 9988999999999839999999974---002100106876 Q gi|254780564|r 44 SKKKSVATQFLRFLLLPIVQQYIAT---ALGEYPIIKGII 80 (107) Q Consensus 44 a~n~~~A~kfiefLlS~e~Q~~~a~---~~~eyPv~~gV~ 80 (107) -++...|.+|.+|+-+++.++.+.. .+-.|-=+..|. T Consensus 9 f~s~~~A~~f~~wi~~~e~~~~ik~~~~stSr~~rL~~i~ 48 (105) T 2r4f_A 9 LPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLH 48 (105) T ss_dssp CSSHHHHHHHHHHHHSHHHHHHHHHHHHTTCSSCEECCCE T ss_pred ECCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCEEEE T ss_conf 4876889999998746356899987542544422440478 No 63 >>2w45_A Nuclease, alkaline exonuclease; endonuclease, gamma-herpesvirus, EBV, BGLF5, DNAse, hydrolase, epstein-BARR virus; 3.00A {Human herpesvirus 4} PDB: 2w4b_A (A:1-94) Probab=22.84 E-value=59 Score=14.71 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=17.0 Q ss_pred HHHHHHHHCHHHHHHHHHHC Q ss_conf 99999983999999997400 Q gi|254780564|r 51 TQFLRFLLLPIVQQYIATAL 70 (107) Q Consensus 51 ~kfiefLlS~e~Q~~~a~~~ 70 (107) .-|=.||-|+++|+.+++.. T Consensus 17 ~tFS~FLrs~~Vq~fia~~~ 36 (94) T 2w45_A 17 YTFARFLRSPETEAFVRNLD 36 (94) T ss_dssp CCHHHHHTCHHHHHHHHTCS T ss_pred HHHHHHHHCCCCHHHHHCCC T ss_conf 26999971641366652255 No 64 >>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} (A:195-331) Probab=22.45 E-value=60 Score=14.67 Aligned_cols=55 Identities=29% Similarity=0.233 Sum_probs=38.1 Q ss_pred CHHHHHHHHHCCCCCCEEECCCCCCCCCC-----EEEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 47899998514878535504658998510-----68654121631699889999999998 Q gi|254780564|r 3 NASSVAIFKNHHSEVSVSYTPFLPKDIGN-----ILCSTVGGIAESSKKKSVATQFLRFL 57 (107) Q Consensus 3 n~yy~~~~k~~~~~~~v~~~~f~~~D~G~-----~v~vsgagI~k~a~n~~~A~kfiefL 57 (107) |..-++.++..|..|.-++.|-.+.+.++ .+.-.|+-+.=.-+..+.|.+|++-| T Consensus 12 nA~~la~~L~~~p~V~~V~yPgl~~~~~~~~~~~~~~~~G~~~sf~l~~~~~a~~f~~~l 71 (137) T 1pff_A 12 NAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNC 71 (137) T ss_dssp HHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTC T ss_pred HHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHC T ss_conf 999999978758984341168877850789987413687604789848899999999837 No 65 >>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel beta barrel, flexible hinge region; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A* (A:218-261) Probab=20.98 E-value=38 Score=15.76 Aligned_cols=28 Identities=7% Similarity=-0.086 Sum_probs=20.2 Q ss_pred ECCCCCHHHHHHHHHHHHCHHHHHHHHHH Q ss_conf 31699889999999998399999999740 Q gi|254780564|r 41 AESSKKKSVATQFLRFLLLPIVQQYIATA 69 (107) Q Consensus 41 ~k~a~n~~~A~kfiefLlS~e~Q~~~a~~ 69 (107) ..++.++ .=+++|.+|.|+++++.|..- T Consensus 13 AeyasD~-~Ek~~L~~L~S~eG~~ey~~~ 40 (44) T 2qtl_A 13 VDYTSDS-AEKRRLQELCSKQGAADYSRF 40 (44) T ss_dssp HTTBCSH-HHHHHHHHHHSSTTHHHHHHH T ss_pred HHHCCCH-HHHHHHHHHCCCCHHHHHHHH T ss_conf 9876999-999999986062006899987 No 66 >>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A (C:) Probab=20.68 E-value=46 Score=15.33 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=9.5 Q ss_pred HHHHHHHHHHHC Q ss_conf 999999999839 Q gi|254780564|r 48 SVATQFLRFLLL 59 (107) Q Consensus 48 ~~A~kfiefLlS 59 (107) .-|+.|+.||.+ T Consensus 17 r~AqdFvqwLmn 28 (29) T 2g49_C 17 RRAQDFVQWLMN 28 (29) T ss_pred HHHHHHHHHHHC T ss_conf 898999999862 No 67 >>3g63_A Pfluding; subatomic resolution, phosphate binding, DING protein, hydrogen ATOM, phosphate binding protein; 0.88A {Pseudomonas fluorescens SBW25} PDB: 3g62_A 2q9t_A 2v3q_A 2cap_A (A:1-302) Probab=20.59 E-value=0.48 Score=26.03 Aligned_cols=22 Identities=14% Similarity=-0.413 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHCHHHHHHHHHH Q ss_conf 9999999998399999999740 Q gi|254780564|r 48 SVATQFLRFLLLPIVQQYIATA 69 (107) Q Consensus 48 ~~A~kfiefLlS~e~Q~~~a~~ 69 (107) ..+++|++|++|+++|+.+... T Consensus 265 ~~~~~fi~~~~s~~gq~~i~~~ 286 (302) T 3g63_A 265 PDAWVPVFGPDNTAGVQPYPTS 286 (302) T ss_dssp GGGGSCCEESTTCTTSEECCSS T ss_pred CCCCCCCCCCCCHHCCCCCCCC T ss_conf 3100013454210003578888 Done!