HHsearch results for GI: 254780564 and protein with PDBid: 1hsj_A

>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1

Probab=97.93  E-value=1.5e-05  Score=49.57  Aligned_cols=74  Identities=15%  Similarity=0.147  Sum_probs=57.5

Q ss_pred             CHHHHHHHHHCCCCCCEEECCCCCCCCC-CEEEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHHHHCCCCHHC
Q ss_conf             4789999851487853550465899851-0686541216316998899999999-983999999997400210010
Q gi|254780564|r    3 NASSVAIFKNHHSEVSVSYTPFLPKDIG-NILCSTVGGIAESSKKKSVATQFLR-FLLLPIVQQYIATALGEYPII   76 (107)
Q Consensus         3 n~yy~~~~k~~~~~~~v~~~~f~~~D~G-~~v~vsgagI~k~a~n~~~A~kfie-fLlS~e~Q~~~a~~~~eyPv~   76 (107)
                      .++.+..++..+.++++...|..++..+ .++...+.+|.++|+|+++|.+||+ ||+|+++|+.+.....-.|+.
T Consensus       228 g~~~~~~~~~~~~~~~v~~~p~~~g~~~~~~~gg~~~~I~~~skn~eaA~~Fi~~~l~s~e~~~~~~~~~~~~~~~  303 (487)
T 1hsj_A          228 GPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVA  303 (487)
T ss_dssp             CGGGHHHHHHTTCCEEEECCCBBTTBCCCCCBEEEEEEEBSSCSCHHHHHHHHHHTTTSHHHHHHHHHHSCCCEES
T ss_pred             CHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
T ss_conf             6678999985288745998067799988645632389998999889999999999847999999999738988663