HHSEARCH alignment of GI: 254780564 and SCOP domain: d1nnfa_

Alignment

Probab=99.61  E-value=1e-15  Score=103.16  Aligned_cols=84  Identities=15%  Similarity=0.213  Sum_probs=72.8

Q ss_pred             CCEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             53550465899851068654121631699889999999998399999999740021001068767421012554472565
Q gi|254780564|r   17 VSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESF   96 (107)
Q Consensus        17 ~~v~~~~f~~~D~G~~v~vsgagI~k~a~n~~~A~kfiefLlS~e~Q~~~a~~~~eyPv~~gV~~~~~~~~~~~~~~d~~   96 (107)
                      ...........+.|+++++.+.+|+|+|||+++|.+||+||+|+|+|+.+++.++.||++++|..+..++.+..++.+.+
T Consensus       209 ~~~~~~~~~~~~~g~~~~~~~~~I~k~s~n~~~A~~Fi~fl~s~e~Q~~~a~~~~~~P~~~~~~~~~~~~~~~~~~~~~~  288 (308)
T d1nnfa_         209 LKSRLYFVRHQDPGALVSYSGAAVLKASKNQAEAQKFVDFLASKKGQEALVAARAEYPLRADVVSPFNLEPYEKLEAPVV  288 (308)
T ss_dssp             CSEEEECCCTTCGGGCEEEEEEEEBTTCSCHHHHHHHHHHHHSHHHHHHHHHHSCCEECC-CCCCTTCCCCHHHHCCCCC
T ss_pred             CCCCEEECCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHCCCCCC
T ss_conf             34321102457898400133565306887899999999997499999999973547307889889713377233177654


Q ss_pred             CHHH
Q ss_conf             8657
Q gi|254780564|r   97 ELIK  100 (107)
Q Consensus        97 ~l~~  100 (107)
                      +...
T Consensus       289 ~~~~  292 (308)
T d1nnfa_         289 SATT  292 (308)
T ss_dssp             CCCC
T ss_pred             CHHH
T ss_conf             4887

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Ferric-binding protein FbpA
species: Haemophilus influenzae [TaxId: 727]