RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780564|ref|YP_003064977.1| hypothetical protein
CLIBASIA_02255 [Candidatus Liberibacter asiaticus str. psy62]
         (107 letters)



>gnl|CDD|33896 COG4143, TbpA, ABC-type thiamine transport system, periplasmic
           component [Coenzyme metabolism].
          Length = 336

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 30  GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKG 78
           G+ L      + + +K   +A +FL+F+L P  Q  I T    YP +K 
Sbjct: 247 GHYLQVEGAAVLKGAKNPELADKFLQFMLSPEFQDAIPTTNWMYPAVKN 295


>gnl|CDD|31031 COG0687, PotD, Spermidine/putrescine-binding periplasmic protein
           [Amino acid transport and metabolism].
          Length = 363

 Score = 30.8 bits (69), Expect = 0.073
 Identities = 17/55 (30%), Positives = 25/55 (45%)

Query: 24  FLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKG 78
           F+    G+IL      I + +K    A +F+ FLL P V   +A  +G  P  K 
Sbjct: 259 FVIPKEGSILWFDNLAIPKGAKNVDAAYKFINFLLDPEVAAKLAEFVGYAPPNKA 313


>gnl|CDD|34879 COG5282, COG5282, Uncharacterized conserved protein [Function
           unknown].
          Length = 359

 Score = 27.3 bits (60), Expect = 0.90
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 15  SEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFL 57
            EV   Y P LP   G +       +A +++     ++F  ++
Sbjct: 130 REVLGQYDPGLPAGPGGLAAVLPNAVAVAAQLLVQPSEFRTWI 172


>gnl|CDD|32727 COG2902, COG2902, NAD-specific glutamate dehydrogenase [Amino acid
           transport and metabolism].
          Length = 1592

 Score = 25.7 bits (56), Expect = 2.6
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 51  TQFLRFLLLPIVQQYIATALGEYPIIKGIITN---RKFNDQTYTNRESFELIKTAQNP 105
            ++L+    P  Q YI   L ++P I   + +    +F+     + ++ E +      
Sbjct: 658 ARYLQQAGFPYSQSYIEATLNKHPDIARSLVDLFDARFDPSIKDSNKAAEALLDKIEE 715


>gnl|CDD|31492 COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production
          and conversion].
          Length = 415

 Score = 25.1 bits (55), Expect = 4.3
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 32 ILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALG 71
          +  + V GIA     K +     + L+  +V   +A A+G
Sbjct: 54 VFFTLVLGIASLGDLKKLGRLGGKTLIYFLVTTTLAIAIG 93


>gnl|CDD|38718 KOG3508, KOG3508, KOG3508, GTPase-activating protein [General
           function prediction only].
          Length = 932

 Score = 25.0 bits (54), Expect = 5.0
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 34  CSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYP 74
           C   G I  S +  S A+ FLRFL   I+   +     EYP
Sbjct: 402 CKPRGRIDLSDRLVS-ASLFLRFLCPAILSPSLFNLAQEYP 441


>gnl|CDD|37607 KOG2396, KOG2396, KOG2396, HAT (Half-A-TPR) repeat-containing
           protein [General function prediction only].
          Length = 568

 Score = 24.6 bits (53), Expect = 5.9
 Identities = 12/66 (18%), Positives = 17/66 (25%), Gaps = 7/66 (10%)

Query: 25  LPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRK 84
           L K+I + L S             +A + L  L    +Q     A       K       
Sbjct: 247 LQKNIIDDLQS--KAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSK-----ES 299

Query: 85  FNDQTY 90
                Y
Sbjct: 300 RCCAVY 305


>gnl|CDD|35556 KOG0335, KOG0335, KOG0335, ATP-dependent RNA helicase [RNA
           processing and modification].
          Length = 482

 Score = 24.1 bits (52), Expect = 9.6
 Identities = 7/29 (24%), Positives = 17/29 (58%)

Query: 31  NILCSTVGGIAESSKKKSVATQFLRFLLL 59
           +IL +T G + +  ++  ++    +FL+L
Sbjct: 204 DILVATPGRLKDLIERGKISLDNCKFLVL 232


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.318    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0767    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,182,570
Number of extensions: 50679
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 11
Length of query: 107
Length of database: 6,263,737
Length adjustment: 74
Effective length of query: 33
Effective length of database: 4,664,671
Effective search space: 153934143
Effective search space used: 153934143
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)