RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780564|ref|YP_003064977.1| hypothetical protein
CLIBASIA_02255 [Candidatus Liberibacter asiaticus str. psy62]
         (107 letters)



>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding
           protein, metal-binding protein, TAT; 1.70A
           {Synechocystis SP} PDB: 2vp1_A* (A:)
          Length = 346

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 18/107 (16%), Positives = 40/107 (37%)

Query: 1   MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLP 60
            +  S+    +    +VS+ +      + G  +  +  G+ +++  +  A  FL +L   
Sbjct: 229 RLQKSTDPADQEVVEKVSLFFPNTGSGERGTHVNVSGAGVLKNAPNRDAAIAFLEYLASD 288

Query: 61  IVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPPK 107
             Q+Y A    EYP+I G+  +           +   +    +  P 
Sbjct: 289 DAQRYFAEGNNEYPVIPGVPIDPVLAAHGQLKGDPLNVSNLGRYQPD 335


>2pt1_A Iron transport protein; C-clamp, iron-binding protein,
           solute-binding protein, periplasmic binding protein, ABC
           transporter, metal transport; 2.00A {Synechocystis SP}
           PDB: 2pt2_A 3f11_A (A:)
          Length = 334

 Score = 45.7 bits (106), Expect = 2e-06
 Identities = 15/78 (19%), Positives = 33/78 (42%)

Query: 30  GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89
           G  +  +  G+ +++  +  A +F+ FL+    Q ++A    EYP++ G+  N+      
Sbjct: 246 GTHVNVSGVGVVKTAPNREGAVKFIEFLVSEPAQAFLAQNNYEYPVLAGVPLNKSVASFG 305

Query: 90  YTNRESFELIKTAQNPPK 107
               ++  L K       
Sbjct: 306 EFKSDTTSLDKLGPALAP 323


>1y9u_A Putative iron binding protein; periplasmic binding protein,
           iron tyrosinate interaction, metal binding protein;
           1.39A {Bordetella pertussis tohama I} (A:)
          Length = 323

 Score = 45.2 bits (105), Expect = 3e-06
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 1/108 (0%)

Query: 1   MINASSVAIFKNHHSEVSVSYTPF-LPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLL 59
           M NA      +     + V    F   KD G  +  +   +A  +  K+ A + L +L+ 
Sbjct: 204 MKNAEPGTDARKWGDAIKVVRPTFATAKDGGTHVNISGAAVAAHAPNKANAVKLLEYLVS 263

Query: 60  PIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPPK 107
              Q   A A  EYP+  G+  +           ++  + + A+   +
Sbjct: 264 EPAQTLYAQANYEYPVRAGVKLDAVVASFGPLKVDTLPVAEIAKYRKQ 311


>3e13_X Putative iron-uptake ABC transport system, periplasmic
           iron-binding protein; beta sheet surrounded by alpha
           helices; 1.60A {Campylobacter jejuni} PDB: 1y4t_A (X:)
          Length = 322

 Score = 44.4 bits (103), Expect = 5e-06
 Identities = 17/87 (19%), Positives = 38/87 (43%)

Query: 21  YTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGII 80
                  + G  +  +   + +SSK +  A +F+ F+L P +Q+ +  +  E+PI   + 
Sbjct: 221 IIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSPEIQKILTDSNYEFPIRNDVE 280

Query: 81  TNRKFNDQTYTNRESFELIKTAQNPPK 107
            ++   D      +   + K A+N  +
Sbjct: 281 LSQTVKDFGTFKEDQIPVSKIAENIKE 307


>3thi_A Protein (thiaminase I); thiamin degradation; 2.00A {Bacillus
           subtilis} (A:)
          Length = 371

 Score = 42.9 bits (99), Expect = 1e-05
 Identities = 5/78 (6%), Positives = 20/78 (25%)

Query: 1   MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLP 60
           +  + S+    ++  +V              +  S V  +   +    +A +    +   
Sbjct: 229 IGYSESMMRMGDYAEQVRFKPISSSAGQDIPLFYSDVVSVNSKTAHPELAKKLANVMASA 288

Query: 61  IVQQYIATALGEYPIIKG 78
              +       +    + 
Sbjct: 289 DTVEQALRPQADGQYPQY 306


>3c9h_A ABC transporter, substrate binding protein; structural
           genomics, MCSG, PSI-2, protein structure initiative;
           HET: CIT; 1.90A {Agrobacterium tumefaciens str} (A:)
          Length = 355

 Score = 42.3 bits (97), Expect = 2e-05
 Identities = 9/77 (11%), Positives = 25/77 (32%)

Query: 30  GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89
             ++ S +G + E++    +  ++L F +    Q  +A  L    +   +      N   
Sbjct: 257 YTVVMSRIGLVPEAAANPELGRRYLEFFMSKEGQTIMARQLQIPAVSPEVAGENTANTMQ 316

Query: 90  YTNRESFELIKTAQNPP 106
             +      +  +    
Sbjct: 317 AIHGAQLRPVPVSPGLM 333


>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A
           {Mannheimia haemolytica} (A:)
          Length = 320

 Score = 42.2 bits (97), Expect = 3e-05
 Identities = 18/87 (20%), Positives = 32/87 (36%)

Query: 21  YTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGII 80
              F   + G     +   IA+ S  K+ A + + +L     Q   A    EYP+ +GI 
Sbjct: 217 IINFPSGEHGTHKNISGVVIAKHSPNKANAVKLIEYLSGEKAQGLYAELNHEYPVKEGIE 276

Query: 81  TNRKFNDQTYTNRESFELIKTAQNPPK 107
            +           ++ +L   A+N   
Sbjct: 277 PSAIVKGWGTFKSDTIKLEDIAKNYEA 303


>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex,
           maltose binding protein, MBP fold, ABC transporter fold,
           thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus
           furiosus} (A:1-163,A:221-338)
          Length = 281

 Score = 41.3 bits (96), Expect = 5e-05
 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 8/113 (7%)

Query: 1   MINAS-SVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGG-----IAESSKKKSVATQFL 54
           M+N   S+   K       V   P + KD         GG      A   K K  A +F 
Sbjct: 168 MVNGPWSINDVKKAGINFGVVPLPPIIKDGKEYWPRPYGGVKLIYFAAGIKNKDAAWKFA 227

Query: 55  RFLLLPIVQQ-YIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPP 106
           ++L         +A  LG  P++  ++ + +  +         + ++ A   P
Sbjct: 228 KWLTTSEESIKTLALELGYIPVLTKVLDDPEIKNDPVI-YGFGQAVQHAYLMP 279


>1nnf_A Iron-utilization periplasmic protein; iron-binding protein,
           EDTA-Fe-protein complex, metal binding protein; HET:
           EDT; 1.10A {Haemophilus influenzae} (A:)
          Length = 309

 Score = 41.0 bits (94), Expect = 5e-05
 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 1/105 (0%)

Query: 3   NASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIV 62
                   +     +         +D G ++  +   + ++SK ++ A +F+ FL     
Sbjct: 195 YYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQAEAQKFVDFLASKKG 254

Query: 63  QQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPPK 107
           Q+ +  A  EYP+   +++                   TAQ+   
Sbjct: 255 QEALVAARAEYPLRADVVSPFNLEPYEKLE-APVVSATTAQDKEH 298


>3k01_A Acarbose/maltose binding protein GACH; ABC transporter,
           acarbose-binding protein, transport protein; 1.35A
           {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
           (A:1-142,A:290-369)
          Length = 222

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 5/87 (5%)

Query: 25  LPKDIGNILCSTVGG----IAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGII 80
           +P+ I     S  GG    +   SK    +  F++++    VQQ     L   P    + 
Sbjct: 136 VPQVIDTGQGSPQGGWNLSVYAGSKNLDASYAFVKYMSSAKVQQQTTEKLSLLPTRTSVY 195

Query: 81  TNRKFNDQTYTNRESFELIKTAQNPPK 107
                 D     +     +  A   P 
Sbjct: 196 EVPSVADNEMV-KFFKPAVDKAVERPW 221


>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate
           complex, MBP 2 fold, ABC transporter fold, thermophilic
           protein; HET: TRE; 1.90A {Thermococcus litoralis}
           (A:1-174,A:231-358)
          Length = 302

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 16  EVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPI 75
            V+        K     L     GI++ S  K++A +F++F+    VQ+  A  LG  P 
Sbjct: 219 GVAPLPHFPGHKS-AATLGGWHIGISKYSDNKALAWEFVKFVESYSVQKGFAMNLGWNPG 277

Query: 76  IKGIITNRKFNDQ 88
              +  +     +
Sbjct: 278 RVDVYDDPAVVSK 290


>2zyo_A Solute-binding protein; open form, sugar binding protein;
           HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB:
           2zyk_A* 2zym_A* 2zyn_A* 2dfz_A* (A:1-129,A:272-355)
          Length = 213

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 2/70 (2%)

Query: 39  GIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKF--NDQTYTNRESF 96
            ++  SK    AT+ ++FL             GE P  K ++ +     N       +  
Sbjct: 143 YLSAYSKYPKYATELMQFLTSKEALASRFKETGEIPPQKELLNDPMIKNNPVVNGFAKQA 202

Query: 97  ELIKTAQNPP 106
                  + P
Sbjct: 203 SKGVPMPSIP 212


>1urs_A Maltose-binding protein; maltodextrin-binding protein,
           acidophIle, thermoacidophIle, hyperthermophIle,
           thermophIle; HET: MLR; 1.45A {Alicyclobacillus
           acidocaldarius} (A:1-143,A:279-355)
          Length = 220

 Score = 37.6 bits (87), Expect = 6e-04
 Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 1/65 (1%)

Query: 39  GIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFEL 98
            + + SK ++     ++ L     QQ       + P +  +  +              E 
Sbjct: 156 FVNKESKTQAADWSLVQALTSAQAQQMYFRDSQQIPALLSVQRSSAVQSSPTFK-AFVEQ 214

Query: 99  IKTAQ 103
           ++ A 
Sbjct: 215 LRYAV 219


>2b3f_A Glucose-binding protein; protein-carbohydrate complex,
           periplasmic binding protein, galactose, GBP, sugar
           binding protein; HET: GAL; 1.56A {Thermus thermophilus
           HB27} PDB: 2b3b_A* (A:1-121,A:269-349)
          Length = 202

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 7/68 (10%), Positives = 20/68 (29%), Gaps = 4/68 (5%)

Query: 39  GIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFEL 98
           G+ + +K +  A  +LR +     Q       G          ++         + +   
Sbjct: 134 GLPKGAKNRQNAINWLRLVGSKEGQDTSNPLKGSIAARLDSDPSKYNAYG----QSAMRD 189

Query: 99  IKTAQNPP 106
            ++ +   
Sbjct: 190 WRSNRIVG 197


>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic
           binding protein, transport protein; 1.04A {Streptococcus
           pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A (A:)
          Length = 401

 Score = 36.4 bits (82), Expect = 0.001
 Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 4/110 (3%)

Query: 1   MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAES----SKKKSVATQFLRF 56
              + ++           +       K+ G  L    G +A S    +K    A  F+ +
Sbjct: 255 PNGSWAITAINEQKPNFKIGTFMIPGKEKGQSLTVGAGDLAWSISATTKHPKEANAFVEY 314

Query: 57  LLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPP 106
           +  P V Q      G    I+G+    + +        +F          
Sbjct: 315 MTRPEVMQKYYDVDGSPTAIEGVKQAGEDSPLAGMTEYAFTDRHLVWLQQ 364


>2qry_A Thiamine-binding periplasmic protein; thiamin binding
           protein, ABC transporter, transport protein; HET: TPS;
           2.25A {Escherichia coli} (A:1-128,A:240-318)
          Length = 207

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 17/75 (22%), Positives = 27/75 (36%)

Query: 30  GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89
           G+ L   V     +SK+  +A +FL+F + P  Q  I T    YP+    +         
Sbjct: 131 GHYLQVEVAARTAASKQPELAQKFLQFXVSPAFQNAIPTGNWXYPVANVTLPAGFEKLTK 190

Query: 90  YTNRESFELIKTAQN 104
                 F   + A  
Sbjct: 191 PATTLEFTPAEVAAQ 205


>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC,
           periplasmic, structural genomics, protein structure
           initiative; 1.97A {Coccidioides immitis RS} (A:)
          Length = 294

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 8/73 (10%), Positives = 22/73 (30%), Gaps = 1/73 (1%)

Query: 7   VAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYI 66
           ++I +    +  +        D   +L      +   +K    A +F ++L+     Q +
Sbjct: 209 LSIPRGLRDQXVIYKKGTNDAD-DPLLNPAHLLVGARAKNAEXAKEFAKWLVSKEGGQKV 267

Query: 67  ATALGEYPIIKGI 79
                +       
Sbjct: 268 IEGFKKDGQQLYS 280


>1xvx_A YFUA; periplasmic iron binding protein; 1.53A {Yersinia
           enterocolitica} (A:)
          Length = 312

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 13/70 (18%), Positives = 25/70 (35%)

Query: 8   AIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIA 67
              K   +        F  +D G  +  + GG+  SSK    A +F++++     Q  + 
Sbjct: 203 DQAKTGENSGKTQLHYFKHQDPGAFVSISGGGVLASSKHPKEAQEFVKWITGKSGQDILR 262

Query: 68  TALGEYPIIK 77
           T       + 
Sbjct: 263 TNNAFEYAVG 272


>1mg1_A Protein (HTLV-1 GP21 ectodomain/maltose-binding protein
           chimera); human T cell leukemia virus type 1, envelope
           protein; HET: MAL; 2.50A {Human t-lymphotropic virus 1}
           (A:1-108,A:252-329)
          Length = 186

 Score = 32.2 bits (73), Expect = 0.029
 Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 7/71 (9%)

Query: 25  LPKDIGNILCSTVGG----IAESSKKKSVATQFL-RFLLLPIVQQYIATALGEYPIIKGI 79
            P  +       VG     I  +S  K +A +FL  +LL     + +        +    
Sbjct: 102 YPIAVEAK--PFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKS 159

Query: 80  ITNRKFNDQTY 90
                  D   
Sbjct: 160 YEEELAKDPRI 170


>1pc3_A Phosphate-binding protein 1; phosphate transport receptor,
           immonodominant antigen, ION-dipole interactions,
           electrostatics; 2.16A {Mycobacterium tuberculosis H37RV}
           (A:)
          Length = 350

 Score = 32.0 bits (71), Expect = 0.031
 Identities = 5/65 (7%), Positives = 16/65 (24%), Gaps = 9/65 (13%)

Query: 37  VGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESF 96
           V    + +        FL + +    +      +   P+   ++           +    
Sbjct: 295 VNNRQKDAATAQTLQAFLHWAITDGNKASFLDQVHFQPLPPAVVK---------LSDALI 345

Query: 97  ELIKT 101
             I +
Sbjct: 346 ATISS 350


>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic
           binding protein, ABC transporter, transport protein,
           ligand; HET: CIT; 1.69A {Methanosarcina acetivorans}
           PDB: 3k6u_A* 3k6w_A 3k6x_A (A:1-123,A:293-354)
          Length = 185

 Score = 31.8 bits (72), Expect = 0.032
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 39  GIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGI 79
            I  +++   +AT+F+  LL    QQ      G+ PI+  I
Sbjct: 130 TIPNNAENSELATEFVALLLGETGQQIFIEN-GQPPIVPAI 169


>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
           subunit chimera; multifunction macromolecular complex,
           ubiquitin, ATP, conformational change, thioester,
           switch, adenylation, protein turnover, ligase; HET: ATP;
           2.80A {Homo sapiens} (B:1-117,B:252-337)
          Length = 203

 Score = 31.0 bits (70), Expect = 0.057
 Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 7/87 (8%)

Query: 25  LPKDIGNILCSTVGG----IAESSKKKSVATQFL-RFLLLPIVQQYIATALGEYPIIKGI 79
           LP   G      VG     I  +S  K +A +FL  +LL     + +        +    
Sbjct: 117 LPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKS 176

Query: 80  ITNRKFNDQTYTNRESFELIKTAQNPP 106
                  D       + E  +  +  P
Sbjct: 177 YEEELAKDPRI--AATMENAQKGEIMP 201


>2gha_A Maltose ABC transporter, periplasmic maltose- binding
           protein; periplasmic binding protein, MBP, maltotriose,
           sugar binding protein; HET: MLR; 1.60A {Thermotoga
           maritima MSB8} PDB: 2ghb_A 2fnc_A* (A:1-111,A:253-336)
          Length = 195

 Score = 31.0 bits (70), Expect = 0.065
 Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 5/68 (7%)

Query: 35  STVGG----IAESSKKKSVATQFL-RFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89
             VG     +   S  K +A +FL  F+        I       P  K ++   K N   
Sbjct: 118 PFVGVQGFMVNAKSPNKLLAIEFLTSFIAKKETMYRIYLGDPRLPSRKDVLELVKDNPDV 177

Query: 90  YTNRESFE 97
                S  
Sbjct: 178 VGFTLSAA 185


>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein,
           N-glycosylation, structural genomics; HET: FLC; 1.60A
           {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A*
           3fj7_A* (A:)
          Length = 237

 Score = 30.1 bits (66), Expect = 0.11
 Identities = 3/49 (6%), Positives = 11/49 (22%), Gaps = 1/49 (2%)

Query: 30  GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKG 78
            +++      +            F+ +L     ++      G       
Sbjct: 188 KDLVVYRTFNVIAKEGASKETQDFIAYLSSKEAKEIFKKY-GWREHHHH 235


>3kjt_A Maltose-binding periplasmic protein; alternate conformation,
           sugar transport, transport, transport protein; 1.50A
           {Escherichia coli k-12} PDB: 3hpi_A 1anf_A* 1dmb_A*
           1ez9_A* 1jw4_A 1jw5_A* 1lls_A 1omp_A 2d21_A 2r6g_E*
           3mbp_A* 4mbp_A* 1fqa_A* 1fqb_A* 1fqc_A* 1fqd_A* 1ezo_A
           1ezp_A 2h25_A 2klf_A ... (A:1-114,A:254-335)
          Length = 196

 Score = 29.9 bits (67), Expect = 0.14
 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 5/61 (8%)

Query: 35  STVGG----IAESSKKKSVATQFLR-FLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89
             VG     I  +S  K +A +FL  +LL     + +        +           D  
Sbjct: 120 PFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPR 179

Query: 90  Y 90
            
Sbjct: 180 I 180


>3h3g_A Fusion protein of maltose-binding periplasmic domain and
           human parathyroid hormone...; GPCR, extracellular
           domain, PTHRP, PTH, PThr1, periplasm, sugar transport,
           transport, membrane protein; HET: MAL; 1.94A
           {Escherichia coli} PDB: 3c4m_A* 3l2j_A* 3ehs_A* 3ehu_A*
           3eht_A* (A:1-114,A:254-335)
          Length = 196

 Score = 29.5 bits (66), Expect = 0.18
 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 5/61 (8%)

Query: 35  STVGG----IAESSKKKSVATQFLR-FLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89
             VG     I  +S  K +A +FL  +LL     + +        +           D  
Sbjct: 120 PFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPR 179

Query: 90  Y 90
            
Sbjct: 180 I 180


>3f5f_A Maltose-binding periplasmic protein, heparan sulfate
           2-O-sulfotransferase 1; maltose binding protein, fusion,
           heparan sulfate biosynthesis; HET: GLC A3P; 2.65A
           {Escherichia coli k-12} (A:1-112,A:252-333)
          Length = 194

 Score = 29.1 bits (65), Expect = 0.19
 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 5/61 (8%)

Query: 35  STVGG----IAESSKKKSVATQFLR-FLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89
             VG     I  +S  K +A +FL  +LL     + +        +           D  
Sbjct: 118 PFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPR 177

Query: 90  Y 90
            
Sbjct: 178 I 178


>2zxt_A Maltose-binding periplasmic protein, linker, mitochondrial
           intermembrane space import...; disulfide bond, alpha
           helix, fusion, sugar transport; HET: MAL; 3.00A
           {Escherichia coli} (A:1-112,A:252-333)
          Length = 194

 Score = 29.1 bits (65), Expect = 0.19
 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 5/61 (8%)

Query: 35  STVGG----IAESSKKKSVATQFLR-FLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89
             VG     I  +S  K +A +FL  +LL     + +        +           D  
Sbjct: 118 PFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPR 177

Query: 90  Y 90
            
Sbjct: 178 I 178


>2vgq_A Maltose-binding periplasmic protein, mitochondrial
           antiviral-signaling protein; immune system/transport,
           IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
           (A:1-127,A:263-348)
          Length = 213

 Score = 28.4 bits (63), Expect = 0.37
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 7/77 (9%)

Query: 35  STVGG----IAESSKKKSVATQFL-RFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89
             VG     I  +S  K +A +FL  +LL     + +        +           D  
Sbjct: 137 PFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPR 196

Query: 90  YTNRESFELIKTAQNPP 106
                + E  +  +  P
Sbjct: 197 I--AATMENAQKGEIMP 211


>1twy_A ABC transporter, periplasmic substrate-binding protein;
           nysgxrc target, structural genomics, protein structure
           initiative; 1.65A {Vibrio cholerae o1 biovar eltor str}
           (A:)
          Length = 290

 Score = 26.0 bits (55), Expect = 1.8
 Identities = 10/67 (14%), Positives = 16/67 (23%)

Query: 1   MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLP 60
            I+  SV              T          L      +  S        +F+ FL   
Sbjct: 203 FISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSE 262

Query: 61  IVQQYIA 67
             ++ I 
Sbjct: 263 SAKKLIV 269


>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding
           protein; solute-binding protein, blood group antigen,
           carbohydrate transport; HET: A2G GAL FUC; 2.35A
           {Streptococcus pneumoniae} (A:1-143,A:308-349)
          Length = 185

 Score = 25.0 bits (54), Expect = 3.4
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 38  GGIAESSK----KKSVATQFLRFLLLPIVQQYIATALGEYP 74
           GGI  SSK    K+ +A +FL++     VQ+ I   +G  P
Sbjct: 145 GGITISSKXSEAKQKLALEFLKYXTSDDVQKVIFEKVGANP 185


>2uvj_A TOGB, ABC type periplasmic sugar-binding protein;
           periplasmic binding protein, pectin degradation,
           trigalacturonic acid; HET: ADA; 1.8A {Yersinia
           enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A
           (A:1-117,A:285-340)
          Length = 173

 Score = 24.8 bits (54), Expect = 4.5
 Identities = 7/41 (17%), Positives = 12/41 (29%)

Query: 39  GIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGI 79
            I +S+K    +   + FLL               P+    
Sbjct: 122 SIGKSTKHPQESAMLINFLLNSKEGVEALGLERGVPLSATA 162


>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein,
           molybdate, tungstate, ligand, unknown function,
           transport protein; 1.60A {Methanosarcina acetivorans}
           (A:1-85,A:255-296)
          Length = 127

 Score = 23.9 bits (52), Expect = 8.6
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 39  GIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPI 75
            I  +++   +AT+F+  LL    QQ      G+ PI
Sbjct: 92  TIPNNAENSELATEFVALLLGETGQQIFIEN-GQPPI 127


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0368    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 705,619
Number of extensions: 24516
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 36
Length of query: 107
Length of database: 4,956,049
Length adjustment: 63
Effective length of query: 44
Effective length of database: 2,826,334
Effective search space: 124358696
Effective search space used: 124358696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (24.0 bits)