RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780564|ref|YP_003064977.1| hypothetical protein CLIBASIA_02255 [Candidatus Liberibacter asiaticus str. psy62] (107 letters) >2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A* (A:) Length = 346 Score = 46.4 bits (108), Expect = 1e-06 Identities = 18/107 (16%), Positives = 40/107 (37%) Query: 1 MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLP 60 + S+ + +VS+ + + G + + G+ +++ + A FL +L Sbjct: 229 RLQKSTDPADQEVVEKVSLFFPNTGSGERGTHVNVSGAGVLKNAPNRDAAIAFLEYLASD 288 Query: 61 IVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPPK 107 Q+Y A EYP+I G+ + + + + P Sbjct: 289 DAQRYFAEGNNEYPVIPGVPIDPVLAAHGQLKGDPLNVSNLGRYQPD 335 >2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, periplasmic binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A (A:) Length = 334 Score = 45.7 bits (106), Expect = 2e-06 Identities = 15/78 (19%), Positives = 33/78 (42%) Query: 30 GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89 G + + G+ +++ + A +F+ FL+ Q ++A EYP++ G+ N+ Sbjct: 246 GTHVNVSGVGVVKTAPNREGAVKFIEFLVSEPAQAFLAQNNYEYPVLAGVPLNKSVASFG 305 Query: 90 YTNRESFELIKTAQNPPK 107 ++ L K Sbjct: 306 EFKSDTTSLDKLGPALAP 323 >1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} (A:) Length = 323 Score = 45.2 bits (105), Expect = 3e-06 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 1/108 (0%) Query: 1 MINASSVAIFKNHHSEVSVSYTPF-LPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLL 59 M NA + + V F KD G + + +A + K+ A + L +L+ Sbjct: 204 MKNAEPGTDARKWGDAIKVVRPTFATAKDGGTHVNISGAAVAAHAPNKANAVKLLEYLVS 263 Query: 60 PIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPPK 107 Q A A EYP+ G+ + ++ + + A+ + Sbjct: 264 EPAQTLYAQANYEYPVRAGVKLDAVVASFGPLKVDTLPVAEIAKYRKQ 311 >3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} PDB: 1y4t_A (X:) Length = 322 Score = 44.4 bits (103), Expect = 5e-06 Identities = 17/87 (19%), Positives = 38/87 (43%) Query: 21 YTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGII 80 + G + + + +SSK + A +F+ F+L P +Q+ + + E+PI + Sbjct: 221 IIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSPEIQKILTDSNYEFPIRNDVE 280 Query: 81 TNRKFNDQTYTNRESFELIKTAQNPPK 107 ++ D + + K A+N + Sbjct: 281 LSQTVKDFGTFKEDQIPVSKIAENIKE 307 >3thi_A Protein (thiaminase I); thiamin degradation; 2.00A {Bacillus subtilis} (A:) Length = 371 Score = 42.9 bits (99), Expect = 1e-05 Identities = 5/78 (6%), Positives = 20/78 (25%) Query: 1 MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLP 60 + + S+ ++ +V + S V + + +A + + Sbjct: 229 IGYSESMMRMGDYAEQVRFKPISSSAGQDIPLFYSDVVSVNSKTAHPELAKKLANVMASA 288 Query: 61 IVQQYIATALGEYPIIKG 78 + + + Sbjct: 289 DTVEQALRPQADGQYPQY 306 >3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} (A:) Length = 355 Score = 42.3 bits (97), Expect = 2e-05 Identities = 9/77 (11%), Positives = 25/77 (32%) Query: 30 GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89 ++ S +G + E++ + ++L F + Q +A L + + N Sbjct: 257 YTVVMSRIGLVPEAAANPELGRRYLEFFMSKEGQTIMARQLQIPAVSPEVAGENTANTMQ 316 Query: 90 YTNRESFELIKTAQNPP 106 + + + Sbjct: 317 AIHGAQLRPVPVSPGLM 333 >1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} (A:) Length = 320 Score = 42.2 bits (97), Expect = 3e-05 Identities = 18/87 (20%), Positives = 32/87 (36%) Query: 21 YTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGII 80 F + G + IA+ S K+ A + + +L Q A EYP+ +GI Sbjct: 217 IINFPSGEHGTHKNISGVVIAKHSPNKANAVKLIEYLSGEKAQGLYAELNHEYPVKEGIE 276 Query: 81 TNRKFNDQTYTNRESFELIKTAQNPPK 107 + ++ +L A+N Sbjct: 277 PSAIVKGWGTFKSDTIKLEDIAKNYEA 303 >1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} (A:1-163,A:221-338) Length = 281 Score = 41.3 bits (96), Expect = 5e-05 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 8/113 (7%) Query: 1 MINAS-SVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGG-----IAESSKKKSVATQFL 54 M+N S+ K V P + KD GG A K K A +F Sbjct: 168 MVNGPWSINDVKKAGINFGVVPLPPIIKDGKEYWPRPYGGVKLIYFAAGIKNKDAAWKFA 227 Query: 55 RFLLLPIVQQ-YIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPP 106 ++L +A LG P++ ++ + + + + ++ A P Sbjct: 228 KWLTTSEESIKTLALELGYIPVLTKVLDDPEIKNDPVI-YGFGQAVQHAYLMP 279 >1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} (A:) Length = 309 Score = 41.0 bits (94), Expect = 5e-05 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 1/105 (0%) Query: 3 NASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIV 62 + + +D G ++ + + ++SK ++ A +F+ FL Sbjct: 195 YYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQAEAQKFVDFLASKKG 254 Query: 63 QQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPPK 107 Q+ + A EYP+ +++ TAQ+ Sbjct: 255 QEALVAARAEYPLRADVVSPFNLEPYEKLE-APVVSATTAQDKEH 298 >3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A* (A:1-142,A:290-369) Length = 222 Score = 39.6 bits (92), Expect = 1e-04 Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 5/87 (5%) Query: 25 LPKDIGNILCSTVGG----IAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGII 80 +P+ I S GG + SK + F++++ VQQ L P + Sbjct: 136 VPQVIDTGQGSPQGGWNLSVYAGSKNLDASYAFVKYMSSAKVQQQTTEKLSLLPTRTSVY 195 Query: 81 TNRKFNDQTYTNRESFELIKTAQNPPK 107 D + + A P Sbjct: 196 EVPSVADNEMV-KFFKPAVDKAVERPW 221 >1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} (A:1-174,A:231-358) Length = 302 Score = 38.7 bits (89), Expect = 3e-04 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 16 EVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPI 75 V+ K L GI++ S K++A +F++F+ VQ+ A LG P Sbjct: 219 GVAPLPHFPGHKS-AATLGGWHIGISKYSDNKALAWEFVKFVESYSVQKGFAMNLGWNPG 277 Query: 76 IKGIITNRKFNDQ 88 + + + Sbjct: 278 RVDVYDDPAVVSK 290 >2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A* (A:1-129,A:272-355) Length = 213 Score = 38.4 bits (89), Expect = 4e-04 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 2/70 (2%) Query: 39 GIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKF--NDQTYTNRESF 96 ++ SK AT+ ++FL GE P K ++ + N + Sbjct: 143 YLSAYSKYPKYATELMQFLTSKEALASRFKETGEIPPQKELLNDPMIKNNPVVNGFAKQA 202 Query: 97 ELIKTAQNPP 106 + P Sbjct: 203 SKGVPMPSIP 212 >1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} (A:1-143,A:279-355) Length = 220 Score = 37.6 bits (87), Expect = 6e-04 Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 1/65 (1%) Query: 39 GIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFEL 98 + + SK ++ ++ L QQ + P + + + E Sbjct: 156 FVNKESKTQAADWSLVQALTSAQAQQMYFRDSQQIPALLSVQRSSAVQSSPTFK-AFVEQ 214 Query: 99 IKTAQ 103 ++ A Sbjct: 215 LRYAV 219 >2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A* (A:1-121,A:269-349) Length = 202 Score = 36.5 bits (84), Expect = 0.001 Identities = 7/68 (10%), Positives = 20/68 (29%), Gaps = 4/68 (5%) Query: 39 GIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFEL 98 G+ + +K + A +LR + Q G ++ + + Sbjct: 134 GLPKGAKNRQNAINWLRLVGSKEGQDTSNPLKGSIAARLDSDPSKYNAYG----QSAMRD 189 Query: 99 IKTAQNPP 106 ++ + Sbjct: 190 WRSNRIVG 197 >2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A (A:) Length = 401 Score = 36.4 bits (82), Expect = 0.001 Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 4/110 (3%) Query: 1 MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAES----SKKKSVATQFLRF 56 + ++ + K+ G L G +A S +K A F+ + Sbjct: 255 PNGSWAITAINEQKPNFKIGTFMIPGKEKGQSLTVGAGDLAWSISATTKHPKEANAFVEY 314 Query: 57 LLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPP 106 + P V Q G I+G+ + + +F Sbjct: 315 MTRPEVMQKYYDVDGSPTAIEGVKQAGEDSPLAGMTEYAFTDRHLVWLQQ 364 >2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli} (A:1-128,A:240-318) Length = 207 Score = 36.5 bits (84), Expect = 0.001 Identities = 17/75 (22%), Positives = 27/75 (36%) Query: 30 GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89 G+ L V +SK+ +A +FL+F + P Q I T YP+ + Sbjct: 131 GHYLQVEVAARTAASKQPELAQKFLQFXVSPAFQNAIPTGNWXYPVANVTLPAGFEKLTK 190 Query: 90 YTNRESFELIKTAQN 104 F + A Sbjct: 191 PATTLEFTPAEVAAQ 205 >3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural genomics, protein structure initiative; 1.97A {Coccidioides immitis RS} (A:) Length = 294 Score = 36.1 bits (82), Expect = 0.002 Identities = 8/73 (10%), Positives = 22/73 (30%), Gaps = 1/73 (1%) Query: 7 VAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYI 66 ++I + + + D +L + +K A +F ++L+ Q + Sbjct: 209 LSIPRGLRDQXVIYKKGTNDAD-DPLLNPAHLLVGARAKNAEXAKEFAKWLVSKEGGQKV 267 Query: 67 ATALGEYPIIKGI 79 + Sbjct: 268 IEGFKKDGQQLYS 280 >1xvx_A YFUA; periplasmic iron binding protein; 1.53A {Yersinia enterocolitica} (A:) Length = 312 Score = 35.2 bits (79), Expect = 0.003 Identities = 13/70 (18%), Positives = 25/70 (35%) Query: 8 AIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIA 67 K + F +D G + + GG+ SSK A +F++++ Q + Sbjct: 203 DQAKTGENSGKTQLHYFKHQDPGAFVSISGGGVLASSKHPKEAQEFVKWITGKSGQDILR 262 Query: 68 TALGEYPIIK 77 T + Sbjct: 263 TNNAFEYAVG 272 >1mg1_A Protein (HTLV-1 GP21 ectodomain/maltose-binding protein chimera); human T cell leukemia virus type 1, envelope protein; HET: MAL; 2.50A {Human t-lymphotropic virus 1} (A:1-108,A:252-329) Length = 186 Score = 32.2 bits (73), Expect = 0.029 Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 7/71 (9%) Query: 25 LPKDIGNILCSTVGG----IAESSKKKSVATQFL-RFLLLPIVQQYIATALGEYPIIKGI 79 P + VG I +S K +A +FL +LL + + + Sbjct: 102 YPIAVEAK--PFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKS 159 Query: 80 ITNRKFNDQTY 90 D Sbjct: 160 YEEELAKDPRI 170 >1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, ION-dipole interactions, electrostatics; 2.16A {Mycobacterium tuberculosis H37RV} (A:) Length = 350 Score = 32.0 bits (71), Expect = 0.031 Identities = 5/65 (7%), Positives = 16/65 (24%), Gaps = 9/65 (13%) Query: 37 VGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESF 96 V + + FL + + + + P+ ++ + Sbjct: 295 VNNRQKDAATAQTLQAFLHWAITDGNKASFLDQVHFQPLPPAVVK---------LSDALI 345 Query: 97 ELIKT 101 I + Sbjct: 346 ATISS 350 >3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic binding protein, ABC transporter, transport protein, ligand; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A (A:1-123,A:293-354) Length = 185 Score = 31.8 bits (72), Expect = 0.032 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 39 GIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGI 79 I +++ +AT+F+ LL QQ G+ PI+ I Sbjct: 130 TIPNNAENSELATEFVALLLGETGQQIFIEN-GQPPIVPAI 169 >2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} (B:1-117,B:252-337) Length = 203 Score = 31.0 bits (70), Expect = 0.057 Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 7/87 (8%) Query: 25 LPKDIGNILCSTVGG----IAESSKKKSVATQFL-RFLLLPIVQQYIATALGEYPIIKGI 79 LP G VG I +S K +A +FL +LL + + + Sbjct: 117 LPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKS 176 Query: 80 ITNRKFNDQTYTNRESFELIKTAQNPP 106 D + E + + P Sbjct: 177 YEEELAKDPRI--AATMENAQKGEIMP 201 >2gha_A Maltose ABC transporter, periplasmic maltose- binding protein; periplasmic binding protein, MBP, maltotriose, sugar binding protein; HET: MLR; 1.60A {Thermotoga maritima MSB8} PDB: 2ghb_A 2fnc_A* (A:1-111,A:253-336) Length = 195 Score = 31.0 bits (70), Expect = 0.065 Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 5/68 (7%) Query: 35 STVGG----IAESSKKKSVATQFL-RFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89 VG + S K +A +FL F+ I P K ++ K N Sbjct: 118 PFVGVQGFMVNAKSPNKLLAIEFLTSFIAKKETMYRIYLGDPRLPSRKDVLELVKDNPDV 177 Query: 90 YTNRESFE 97 S Sbjct: 178 VGFTLSAA 185 >2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A* (A:) Length = 237 Score = 30.1 bits (66), Expect = 0.11 Identities = 3/49 (6%), Positives = 11/49 (22%), Gaps = 1/49 (2%) Query: 30 GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKG 78 +++ + F+ +L ++ G Sbjct: 188 KDLVVYRTFNVIAKEGASKETQDFIAYLSSKEAKEIFKKY-GWREHHHH 235 >3kjt_A Maltose-binding periplasmic protein; alternate conformation, sugar transport, transport, transport protein; 1.50A {Escherichia coli k-12} PDB: 3hpi_A 1anf_A* 1dmb_A* 1ez9_A* 1jw4_A 1jw5_A* 1lls_A 1omp_A 2d21_A 2r6g_E* 3mbp_A* 4mbp_A* 1fqa_A* 1fqb_A* 1fqc_A* 1fqd_A* 1ezo_A 1ezp_A 2h25_A 2klf_A ... (A:1-114,A:254-335) Length = 196 Score = 29.9 bits (67), Expect = 0.14 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 5/61 (8%) Query: 35 STVGG----IAESSKKKSVATQFLR-FLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89 VG I +S K +A +FL +LL + + + D Sbjct: 120 PFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPR 179 Query: 90 Y 90 Sbjct: 180 I 180 >3h3g_A Fusion protein of maltose-binding periplasmic domain and human parathyroid hormone...; GPCR, extracellular domain, PTHRP, PTH, PThr1, periplasm, sugar transport, transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A* 3ehs_A* 3ehu_A* 3eht_A* (A:1-114,A:254-335) Length = 196 Score = 29.5 bits (66), Expect = 0.18 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 5/61 (8%) Query: 35 STVGG----IAESSKKKSVATQFLR-FLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89 VG I +S K +A +FL +LL + + + D Sbjct: 120 PFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPR 179 Query: 90 Y 90 Sbjct: 180 I 180 >3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12} (A:1-112,A:252-333) Length = 194 Score = 29.1 bits (65), Expect = 0.19 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 5/61 (8%) Query: 35 STVGG----IAESSKKKSVATQFLR-FLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89 VG I +S K +A +FL +LL + + + D Sbjct: 118 PFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPR 177 Query: 90 Y 90 Sbjct: 178 I 178 >2zxt_A Maltose-binding periplasmic protein, linker, mitochondrial intermembrane space import...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli} (A:1-112,A:252-333) Length = 194 Score = 29.1 bits (65), Expect = 0.19 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 5/61 (8%) Query: 35 STVGG----IAESSKKKSVATQFLR-FLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89 VG I +S K +A +FL +LL + + + D Sbjct: 118 PFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPR 177 Query: 90 Y 90 Sbjct: 178 I 178 >2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli} (A:1-127,A:263-348) Length = 213 Score = 28.4 bits (63), Expect = 0.37 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 7/77 (9%) Query: 35 STVGG----IAESSKKKSVATQFL-RFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89 VG I +S K +A +FL +LL + + + D Sbjct: 137 PFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPR 196 Query: 90 YTNRESFELIKTAQNPP 106 + E + + P Sbjct: 197 I--AATMENAQKGEIMP 211 >1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} (A:) Length = 290 Score = 26.0 bits (55), Expect = 1.8 Identities = 10/67 (14%), Positives = 16/67 (23%) Query: 1 MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLP 60 I+ SV T L + S +F+ FL Sbjct: 203 FISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSE 262 Query: 61 IVQQYIA 67 ++ I Sbjct: 263 SAKKLIV 269 >2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae} (A:1-143,A:308-349) Length = 185 Score = 25.0 bits (54), Expect = 3.4 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Query: 38 GGIAESSK----KKSVATQFLRFLLLPIVQQYIATALGEYP 74 GGI SSK K+ +A +FL++ VQ+ I +G P Sbjct: 145 GGITISSKXSEAKQKLALEFLKYXTSDDVQKVIFEKVGANP 185 >2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A (A:1-117,A:285-340) Length = 173 Score = 24.8 bits (54), Expect = 4.5 Identities = 7/41 (17%), Positives = 12/41 (29%) Query: 39 GIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGI 79 I +S+K + + FLL P+ Sbjct: 122 SIGKSTKHPQESAMLINFLLNSKEGVEALGLERGVPLSATA 162 >3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Methanosarcina acetivorans} (A:1-85,A:255-296) Length = 127 Score = 23.9 bits (52), Expect = 8.6 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Query: 39 GIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPI 75 I +++ +AT+F+ LL QQ G+ PI Sbjct: 92 TIPNNAENSELATEFVALLLGETGQQIFIEN-GQPPI 127 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.318 0.133 0.374 Gapped Lambda K H 0.267 0.0368 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 705,619 Number of extensions: 24516 Number of successful extensions: 77 Number of sequences better than 10.0: 1 Number of HSP's gapped: 77 Number of HSP's successfully gapped: 36 Length of query: 107 Length of database: 4,956,049 Length adjustment: 63 Effective length of query: 44 Effective length of database: 2,826,334 Effective search space: 124358696 Effective search space used: 124358696 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (24.0 bits)