RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780564|ref|YP_003064977.1| hypothetical protein
CLIBASIA_02255 [Candidatus Liberibacter asiaticus str. psy62]
(107 letters)
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein,
metal-binding protein, TAT; 1.70A {Synechocystis SP}
PDB: 2vp1_A*
Length = 346
Score = 44.0 bits (102), Expect = 7e-06
Identities = 18/107 (16%), Positives = 40/107 (37%)
Query: 1 MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLP 60
+ S+ + +VS+ + + G + + G+ +++ + A FL +L
Sbjct: 229 RLQKSTDPADQEVVEKVSLFFPNTGSGERGTHVNVSGAGVLKNAPNRDAAIAFLEYLASD 288
Query: 61 IVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPPK 107
Q+Y A EYP+I G+ + + + + P
Sbjct: 289 DAQRYFAEGNNEYPVIPGVPIDPVLAAHGQLKGDPLNVSNLGRYQPD 335
>2pt1_A Iron transport protein; C-clamp, iron-binding protein,
solute-binding protein, periplasmic binding protein, ABC
transporter, metal transport; 2.00A {Synechocystis SP}
PDB: 2pt2_A 3f11_A
Length = 334
Score = 43.1 bits (100), Expect = 1e-05
Identities = 13/67 (19%), Positives = 30/67 (44%)
Query: 13 HHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGE 72
+V + G + + G+ +++ + A +F+ FL+ Q ++A E
Sbjct: 229 KAIAENVGVFFPNQEGRGTHVNVSGVGVVKTAPNREGAVKFIEFLVSEPAQAFLAQNNYE 288
Query: 73 YPIIKGI 79
YP++ G+
Sbjct: 289 YPVLAGV 295
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding
protein; beta sheet surrounded by alpha helices; 1.60A
{Campylobacter jejuni} PDB: 1y4t_A
Length = 322
Score = 41.9 bits (97), Expect = 4e-05
Identities = 19/97 (19%), Positives = 42/97 (43%)
Query: 11 KNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATAL 70
K+ S+ + G + + + +SSK + A +F+ F+L P +Q+ + +
Sbjct: 211 KDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSPEIQKILTDSN 270
Query: 71 GEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPPK 107
E+PI + ++ D + + K A+N +
Sbjct: 271 YEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKE 307
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC
transporter, transport protein; HET: TPS; 2.25A
{Escherichia coli}
Length = 330
Score = 40.1 bits (92), Expect = 1e-04
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 30 GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGII 80
G+ L V +SK+ +A +FL+F++ P Q I T YP+ +
Sbjct: 242 GHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTL 292
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose
binding protein, MBP fold, ABC transporter fold,
thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus
furiosus} SCOP: c.94.1.1
Length = 381
Score = 39.5 bits (91), Expect = 2e-04
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 7/108 (6%)
Query: 6 SVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGG-----IAESSKKKSVATQFLRFLLLP 60
S+ K V P + KD GG A K K A +F ++L
Sbjct: 231 SINDVKKAGINFGVVPLPPIIKDGKEYWPRPYGGVKLIYFAAGIKNKDAAWKFAKWLTTS 290
Query: 61 IVQQ-YIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPPK 107
+A LG P++ ++ + + + + ++ A PK
Sbjct: 291 EESIKTLALELGYIPVLTKVLDDPEIKNDPVI-YGFGQAVQHAYLMPK 337
>3c9h_A ABC transporter, substrate binding protein; structural genomics,
MCSG, PSI-2, protein structure initiative; HET: CIT;
1.90A {Agrobacterium tumefaciens str}
Length = 355
Score = 38.7 bits (88), Expect = 3e-04
Identities = 9/71 (12%), Positives = 24/71 (33%)
Query: 30 GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89
++ S +G + E++ + ++L F + Q +A L + + N
Sbjct: 257 YTVVMSRIGLVPEAAANPELGRRYLEFFMSKEGQTIMARQLQIPAVSPEVAGENTANTMQ 316
Query: 90 YTNRESFELIK 100
+ +
Sbjct: 317 AIHGAQLRPVP 327
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia
haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A
Length = 320
Score = 38.1 bits (87), Expect = 5e-04
Identities = 18/84 (21%), Positives = 32/84 (38%)
Query: 24 FLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNR 83
F + G + IA+ S K+ A + + +L Q A EYP+ +GI +
Sbjct: 220 FPSGEHGTHKNISGVVIAKHSPNKANAVKLIEYLSGEKAQGLYAELNHEYPVKEGIEPSA 279
Query: 84 KFNDQTYTNRESFELIKTAQNPPK 107
++ +L A+N
Sbjct: 280 IVKGWGTFKSDTIKLEDIAKNYEA 303
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein,
EDTA-Fe-protein complex, metal binding protein; HET:
EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB:
1mrp_A 1d9v_A 1qvs_A 2o6a_A 2o68_A 2o69_A 1qw0_A 1o7t_A*
1xc1_A* 1r1n_A* 1d9y_A
Length = 309
Score = 37.8 bits (86), Expect = 6e-04
Identities = 13/75 (17%), Positives = 32/75 (42%)
Query: 8 AIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIA 67
+ + +D G ++ + + ++SK ++ A +F+ FL Q+ +
Sbjct: 200 LAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQAEAQKFVDFLASKKGQEALV 259
Query: 68 TALGEYPIIKGIITN 82
A EYP+ +++
Sbjct: 260 AARAEYPLRADVVSP 274
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron
tyrosinate interaction, metal binding protein; 1.39A
{Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB:
2ows_A 2owt_A
Length = 323
Score = 37.9 bits (86), Expect = 6e-04
Identities = 18/89 (20%), Positives = 35/89 (39%)
Query: 19 VSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKG 78
V T KD G + + +A + K+ A + L +L+ Q A A EYP+ G
Sbjct: 223 VRPTFATAKDGGTHVNISGAAVAAHAPNKANAVKLLEYLVSEPAQTLYAQANYEYPVRAG 282
Query: 79 IITNRKFNDQTYTNRESFELIKTAQNPPK 107
+ + ++ + + A+ +
Sbjct: 283 VKLDAVVASFGPLKVDTLPVAEIAKYRKQ 311
>1xvx_A YFUA; periplasmic iron binding protein; 1.53A {Yersinia
enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
Length = 312
Score = 35.8 bits (81), Expect = 0.002
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Query: 1 MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLP 60
V K + F +D G + + GG+ SSK A +F++++
Sbjct: 196 YHYYRFVDQAKTGENSGKTQLHYFKHQDPGAFVSISGGGVLASSKHPKEAQEFVKWITGK 255
Query: 61 IVQQYIATALG-EYPIIKGIITN 82
Q + T EY + +N
Sbjct: 256 SGQDILRTNNAFEYAVGVDAASN 278
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic
binding protein, ABC transporter, transport protein,
ligand; HET: CIT; 1.69A {Methanosarcina acetivorans}
PDB: 3k6u_A* 3k6w_A 3k6x_A
Length = 354
Score = 34.7 bits (78), Expect = 0.006
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 1 MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLP 60
+ A ++ + + V + + I +++ +AT+F+ LL
Sbjct: 261 LPPAIDLSSLEYADNYSKVQVEMVNGEVVTGSPIVYGVTIPNNAENSELATEFVALLLGE 320
Query: 61 IVQQYIATALGEYPIIKGIITN 82
QQ G+ PI+ I
Sbjct: 321 TGQQIFI-ENGQPPIVPAIAEG 341
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein,
sugar binding protein, virulence, alpha-glucan, sugar
transport; HET: GLC; 2.00A {Streptococcus pneumoniae}
PDB: 2xd2_A*
Length = 416
Score = 33.2 bits (75), Expect = 0.015
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 44 SKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQ 103
K + +F+ FL+ Q+ + E P + + + T + K Q
Sbjct: 308 VKNLEASQKFVDFLVATEQQKVLYDKTNEIPANTEARSYAEGKNDELT-TAVIKQFKNTQ 366
Query: 104 NPP 106
P
Sbjct: 367 PLP 369
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein,
unknown function, metal binding protein, transport
protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A
2onk_E 2onr_A
Length = 295
Score = 32.9 bits (73), Expect = 0.016
Identities = 8/57 (14%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 19 VSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPI 75
V K++ I ++++ + +A +F++ ++ Q+ + G+ P+
Sbjct: 240 VKVVLANGKEVTGKPIVYGITIPKNAENRELAVEFVKLVISEEGQEILREL-GQEPL 295
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding
protein, transport protein; 1.04A {Streptococcus
pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Length = 401
Score = 32.8 bits (73), Expect = 0.019
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 43 SSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGI 79
++K A F+ ++ P V Q G I+G+
Sbjct: 301 TTKHPKEANAFVEYMTRPEVMQKYYDVDGSPTAIEGV 337
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein,
molybdate, tungstate, ligand, unknown function,
transport protein; 1.60A {Methanosarcina acetivorans}
Length = 296
Score = 32.2 bits (71), Expect = 0.029
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 19 VSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPI 75
V + + I +++ +AT+F+ LL QQ G+ PI
Sbjct: 241 VQVEMVNGEVVTGSPIVYGVTIPNNAENSELATEFVALLLGETGQQIFI-ENGQPPI 296
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein,
molybdate, tungstate, ligand, unknown function,
transport protein; 1.60A {Pyrococcus furiosus} PDB:
3cg3_A
Length = 296
Score = 30.6 bits (67), Expect = 0.095
Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 11 KNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATAL 70
+ + ++S++ + V + + + + VA +FLR+LL ++
Sbjct: 234 EKFYGQISITLGSTGKTIKAKPIVYGVT-VLKDAPNREVAIEFLRYLLSENGKRIFEKNH 292
Query: 71 GEY 73
++
Sbjct: 293 QDF 295
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2e5e_A
Length = 581
Score = 30.1 bits (67), Expect = 0.14
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Query: 24 FLPKDIGNILCSTVGG----IAESSKKKSVATQFLRFLLL-PIVQQYIATALGEYPI 75
LP G VG I +S K +A +FL LL + + +
Sbjct: 246 VLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAV 302
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP
fusion, AHA1/BPI domain-like, super roll, sugar T
transport, allergen; HET: GLC; 2.35A {Escherichia coli}
PDB: 1mg1_A*
Length = 568
Score = 29.2 bits (65), Expect = 0.22
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Query: 24 FLPKDIGNILCSTVGG----IAESSKKKSVATQFLRFLLL-PIVQQYIATALGEYPI 75
LP G VG I +S K +A +FL LL + + +
Sbjct: 246 VLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAV 302
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC
transporter; 1.20A {Azotobacter vinelandii} SCOP:
c.94.1.1
Length = 231
Score = 28.5 bits (62), Expect = 0.38
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 30 GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYP 74
I +S+ +K+ A QF+ ++ P I A P
Sbjct: 186 YYEPIVQQAVITKSTAEKANAEQFMSWMKGPKAVAIIKAAGYVLP 230
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein,
N-glycosylation, structural genomics; HET: FLC; 1.60A
{Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A*
3fj7_A*
Length = 237
Score = 28.0 bits (61), Expect = 0.52
Identities = 2/29 (6%), Positives = 7/29 (24%)
Query: 39 GIAESSKKKSVATQFLRFLLLPIVQQYIA 67
+ F+ +L ++
Sbjct: 197 NVIAKEGASKETQDFIAYLSSKEAKEIFK 225
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate
2-O-sulfotransferase 1; maltose binding protein, fusion,
heparan sulfate biosynthesis; HET: GLC A3P; 2.65A
{Escherichia coli k-12}
Length = 658
Score = 28.2 bits (62), Expect = 0.52
Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 4/109 (3%)
Query: 1 MINASSVAIFKNHHSEVSVSYTPFLP-KDIGNILCSTVGGIAESSKKKSVATQFLRFLLL 59
+ + + V+ P + + GI +S K +A +FL LL
Sbjct: 226 INGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLL 285
Query: 60 -PIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPPK 107
+ + + D + E + + P
Sbjct: 286 TDEGLEAVNKDKPLGAVALKSYEEELAKDPRI--AATMENAQKGEIMPN 332
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 27.7 bits (61), Expect = 0.66
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 25 LPKDIGNILCSTVGG----IAESSKKKSVATQFLRFLLL-PIVQQYIATALGEYPI 75
LP G VG I +S K +A +FL LL + + +
Sbjct: 251 LPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAV 306
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein,
molybdate, tungstate, ligand, unknown function,
transport protein; 1.70A {Methanocaldococcus jannaschii}
Length = 292
Score = 27.1 bits (58), Expect = 0.93
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 23 PFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPI 75
K I + ++ K A +F++F+L + G+ I
Sbjct: 243 IAKNKTINAKPIVYGMTVPTNAPHKKEAIEFVKFVLGH---PEVLENNGQPAI 292
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 26.8 bits (59), Expect = 1.3
Identities = 16/105 (15%), Positives = 25/105 (23%), Gaps = 60/105 (57%)
Query: 12 NHHSEVSVSYTPFLPKD----IG------NILCSTVGGIAES------------------ 43
N H LP I N+ V G +S
Sbjct: 357 NSH----------LPAGKQVEISLVNGAKNL---VVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 44 ------SKKK-SVATQFLRFLLLPIV----QQYIATALGEYPIIK 77
S++K + +F LP+ + A +I
Sbjct: 404 QSRIPFSERKLKFSNRF-----LPVASPFHSHLLVPA---SDLIN 440
Score = 25.3 bits (55), Expect = 3.5
Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 37/131 (28%)
Query: 2 INASSVAIFKNHHSEVSVSYTPFLPKDIG-----------NILCSTVGGIAESSKKKSV- 49
++A S H + +P IL G A + +
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLL--VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 50 --ATQFLRFLLLPIVQQYIATALGEYPIIKGIITN---RKF--------------NDQTY 90
+FL ++ + +G++ + + + +
Sbjct: 59 ELVGKFLGYVSSLVEPS----KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 91 TNRESFELIKT 101
T ++ ELIK
Sbjct: 115 TLVKTKELIKN 125
Score = 24.5 bits (53), Expect = 5.4
Identities = 23/83 (27%), Positives = 27/83 (32%), Gaps = 39/83 (46%)
Query: 9 IFK--NHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQF----LRFL----- 57
IFK N HS SYT F S K ATQF L +
Sbjct: 1706 IFKEINEHS---TSYT-F-----------------RSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 58 -------LLPIVQQYIATALGEY 73
L+P + +LGEY
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEY 1767
>1amf_A Molybdate transport protein MODA; periplasmic, binding protein;
1.75A {Escherichia coli} SCOP: c.94.1.1 PDB: 1wod_A
Length = 233
Score = 25.0 bits (53), Expect = 4.2
Identities = 3/30 (10%), Positives = 6/30 (20%)
Query: 38 GGIAESSKKKSVATQFLRFLLLPIVQQYIA 67
+ F +L P +
Sbjct: 197 PVAVVEGHNNATVKAFYDYLKGPQAAEIFK 226
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics
center for infectious disease, S mycobacterium, PLP,
schiff base; HET: LLP; 1.85A {Mycobacterium
tuberculosis}
Length = 414
Score = 24.6 bits (53), Expect = 5.8
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 20/82 (24%)
Query: 3 NASSVAIFKNHHSEVS-VSYTPFLP------------KDIGNILCSTVGGIAESSKKKSV 49
+A +A F N H V V Y P+LP G ++ + + +K++
Sbjct: 287 SAQRIAEFLNGHPSVRWVRY-PYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQR-- 343
Query: 50 ATQFLRFLLLPIVQQYIATALG 71
A + L + L I+ LG
Sbjct: 344 AFEVLDKMRLI----DISNNLG 361
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel,
licmsn, substrate specificity, acyltransferase,
amino-acid biosynthesis; 2.00A {Leptospira interrogans}
PDB: 3blf_A 3bli_A*
Length = 337
Score = 24.5 bits (52), Expect = 6.5
Identities = 5/24 (20%), Positives = 8/24 (33%), Gaps = 5/24 (20%)
Query: 8 AIFKNHHSEVSVSYTPFLPKDIGN 31
K ++ P LP+ G
Sbjct: 317 GDKKG-----NLYANPILPERFGR 335
>3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A
{Human herpesvirus 8 type M}
Length = 508
Score = 24.1 bits (52), Expect = 8.9
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 6 SVAIFKNHHSEVSVSYTP--FLPKDIGNILCSTVGGIAESSKKKSVAT-QFLRFLLLPIV 62
S +++K S + + TP + + L T+ G+ ++ +A+ F +FL V
Sbjct: 12 STSLYKKAGSAMEATPTPADLFSE---DYLVDTLDGLTVDDQQAVLASLSFSKFLKHAKV 68
Query: 63 QQYIATA 69
+ + A A
Sbjct: 69 RDWCAQA 75
>2hqy_A Conserved hypothetical protein; PSI2, MAD, structural genomics,
protein structure initiative; HET: COA; 1.80A
{Bacteroides thetaiotaomicron vpi-5482} SCOP: d.108.1.4
d.108.1.4
Length = 305
Score = 23.7 bits (51), Expect = 9.8
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 71 GEYPIIKGIITNRKFNDQTYTNRESF 96
G Y +I NR Y NRE
Sbjct: 244 GAYAMINYEFANRIPEQYIYINREED 269
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.133 0.374
Gapped
Lambda K H
0.267 0.0514 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 804,567
Number of extensions: 29484
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 34
Length of query: 107
Length of database: 5,693,230
Length adjustment: 71
Effective length of query: 36
Effective length of database: 3,971,906
Effective search space: 142988616
Effective search space used: 142988616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)