RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780564|ref|YP_003064977.1| hypothetical protein
CLIBASIA_02255 [Candidatus Liberibacter asiaticus str. psy62]
         (107 letters)



>d1y4ta_ c.94.1.1 (A:) Ferric-binding protein FbpA {Campylobacter
           jejuni [TaxId: 197]}
          Length = 317

 Score = 41.3 bits (95), Expect = 2e-05
 Identities = 15/69 (21%), Positives = 32/69 (46%)

Query: 11  KNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATAL 70
           K+     S+        + G  +  +   + +SSK +  A +F+ F+L P +Q+ +  + 
Sbjct: 210 KDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSPEIQKILTDSN 269

Query: 71  GEYPIIKGI 79
            E+PI   +
Sbjct: 270 YEFPIRNDV 278


>d1y9ua_ c.94.1.1 (A:) Ferric-binding protein FbpA {Bordetella
           pertussis [TaxId: 520]}
          Length = 318

 Score = 40.9 bits (94), Expect = 3e-05
 Identities = 18/89 (20%), Positives = 35/89 (39%)

Query: 19  VSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKG 78
           V  T    KD G  +  +   +A  +  K+ A + L +L+    Q   A A  EYP+  G
Sbjct: 218 VRPTFATAKDGGTHVNISGAAVAAHAPNKANAVKLLEYLVSEPAQTLYAQANYEYPVRAG 277

Query: 79  IITNRKFNDQTYTNRESFELIKTAQNPPK 107
           +  +           ++  + + A+   +
Sbjct: 278 VKLDAVVASFGPLKVDTLPVAEIAKYRKQ 306


>d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia
           enterocolitica, YfuA [TaxId: 630]}
          Length = 311

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 1   MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLP 60
                 V   K   +        F  +D G  +  + GG+  SSK    A +F++++   
Sbjct: 195 YHYYRFVDQAKTGENSGKTQLHYFKHQDPGAFVSISGGGVLASSKHPKEAQEFVKWITGK 254

Query: 61  IVQQYIATA-LGEYPIIKGIITN 82
             Q  + T    EY +     +N
Sbjct: 255 SGQDILRTNNAFEYAVGVDAASN 277


>d1q35a_ c.94.1.1 (A:) Ferric-binding protein FbpA {Mannheimia
           haemolytica [TaxId: 75985]}
          Length = 318

 Score = 36.1 bits (82), Expect = 8e-04
 Identities = 17/78 (21%), Positives = 30/78 (38%)

Query: 30  GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89
           G     +   IA+ S  K+ A + + +L     Q   A    EYP+ +GI  +       
Sbjct: 226 GTHKNISGVVIAKHSPNKANAVKLIEYLSGEKAQGLYAELNHEYPVKEGIEPSAIVKGWG 285

Query: 90  YTNRESFELIKTAQNPPK 107
               ++ +L   A+N   
Sbjct: 286 TFKSDTIKLEDIAKNYEA 303


>d2onsa1 c.94.1.1 (A:32-342) Molybdate-binding protein, ModA
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 311

 Score = 34.8 bits (78), Expect = 0.002
 Identities = 8/61 (13%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 19  VSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKG 78
           V       K++          I ++++ + +A +F++ ++    Q+ +    G+ P++  
Sbjct: 237 VKVVLANGKEVTGKPIVYGITIPKNAENRELAVEFVKLVISEEGQEILREL-GQEPLVPP 295

Query: 79  I 79
            
Sbjct: 296 R 296


>d1nnfa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Haemophilus
           influenzae [TaxId: 727]}
          Length = 308

 Score = 32.5 bits (72), Expect = 0.010
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 1   MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAE--SSKKKSVATQFLRFLL 58
           +IN              ++    +  +        +  G A   +SK ++ A +F+ FL 
Sbjct: 191 LINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQAEAQKFVDFLA 250

Query: 59  LPIVQQYIATALGEYPIIKGIITN 82
               Q+ +  A  EYP+   +++ 
Sbjct: 251 SKKGQEALVAARAEYPLRADVVSP 274


>d1atga_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Azotobacter
           vinelandii [TaxId: 354]}
          Length = 231

 Score = 28.5 bits (62), Expect = 0.14
 Identities = 10/45 (22%), Positives = 17/45 (37%)

Query: 30  GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYP 74
                     I +S+ +K+ A QF+ ++  P     I  A    P
Sbjct: 186 YYEPIVQQAVITKSTAEKANAEQFMSWMKGPKAVAIIKAAGYVLP 230


>d1amfa_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Escherichia
           coli [TaxId: 562]}
          Length = 231

 Score = 24.6 bits (52), Expect = 2.2
 Identities = 3/25 (12%), Positives = 6/25 (24%)

Query: 43  SSKKKSVATQFLRFLLLPIVQQYIA 67
                +    F  +L  P   +   
Sbjct: 200 EGHNNATVKAFYDYLKGPQAAEIFK 224


>d1j7qa_ a.39.1.5 (A:) Calcium vector protein {Amphioxus
           (Branchiostoma lanceolatum) [TaxId: 7740]}
          Length = 86

 Score = 24.4 bits (52), Expect = 3.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 88  QTYTNRESFELIKTAQNP 105
           QTYT RE+  ++K A+ P
Sbjct: 45  QTYTKRETEAIMKEARGP 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 353,518
Number of extensions: 13233
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 13
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)