RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780564|ref|YP_003064977.1| hypothetical protein CLIBASIA_02255 [Candidatus Liberibacter asiaticus str. psy62] (107 letters) >d1y4ta_ c.94.1.1 (A:) Ferric-binding protein FbpA {Campylobacter jejuni [TaxId: 197]} Length = 317 Score = 41.3 bits (95), Expect = 2e-05 Identities = 15/69 (21%), Positives = 32/69 (46%) Query: 11 KNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATAL 70 K+ S+ + G + + + +SSK + A +F+ F+L P +Q+ + + Sbjct: 210 KDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSPEIQKILTDSN 269 Query: 71 GEYPIIKGI 79 E+PI + Sbjct: 270 YEFPIRNDV 278 >d1y9ua_ c.94.1.1 (A:) Ferric-binding protein FbpA {Bordetella pertussis [TaxId: 520]} Length = 318 Score = 40.9 bits (94), Expect = 3e-05 Identities = 18/89 (20%), Positives = 35/89 (39%) Query: 19 VSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKG 78 V T KD G + + +A + K+ A + L +L+ Q A A EYP+ G Sbjct: 218 VRPTFATAKDGGTHVNISGAAVAAHAPNKANAVKLLEYLVSEPAQTLYAQANYEYPVRAG 277 Query: 79 IITNRKFNDQTYTNRESFELIKTAQNPPK 107 + + ++ + + A+ + Sbjct: 278 VKLDAVVASFGPLKVDTLPVAEIAKYRKQ 306 >d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia enterocolitica, YfuA [TaxId: 630]} Length = 311 Score = 38.1 bits (87), Expect = 2e-04 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 1/83 (1%) Query: 1 MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLP 60 V K + F +D G + + GG+ SSK A +F++++ Sbjct: 195 YHYYRFVDQAKTGENSGKTQLHYFKHQDPGAFVSISGGGVLASSKHPKEAQEFVKWITGK 254 Query: 61 IVQQYIATA-LGEYPIIKGIITN 82 Q + T EY + +N Sbjct: 255 SGQDILRTNNAFEYAVGVDAASN 277 >d1q35a_ c.94.1.1 (A:) Ferric-binding protein FbpA {Mannheimia haemolytica [TaxId: 75985]} Length = 318 Score = 36.1 bits (82), Expect = 8e-04 Identities = 17/78 (21%), Positives = 30/78 (38%) Query: 30 GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKGIITNRKFNDQT 89 G + IA+ S K+ A + + +L Q A EYP+ +GI + Sbjct: 226 GTHKNISGVVIAKHSPNKANAVKLIEYLSGEKAQGLYAELNHEYPVKEGIEPSAIVKGWG 285 Query: 90 YTNRESFELIKTAQNPPK 107 ++ +L A+N Sbjct: 286 TFKSDTIKLEDIAKNYEA 303 >d2onsa1 c.94.1.1 (A:32-342) Molybdate-binding protein, ModA {Archaeoglobus fulgidus [TaxId: 2234]} Length = 311 Score = 34.8 bits (78), Expect = 0.002 Identities = 8/61 (13%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 19 VSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYPIIKG 78 V K++ I ++++ + +A +F++ ++ Q+ + G+ P++ Sbjct: 237 VKVVLANGKEVTGKPIVYGITIPKNAENRELAVEFVKLVISEEGQEILREL-GQEPLVPP 295 Query: 79 I 79 Sbjct: 296 R 296 >d1nnfa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Haemophilus influenzae [TaxId: 727]} Length = 308 Score = 32.5 bits (72), Expect = 0.010 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 2/84 (2%) Query: 1 MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAE--SSKKKSVATQFLRFLL 58 +IN ++ + + + G A +SK ++ A +F+ FL Sbjct: 191 LINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQAEAQKFVDFLA 250 Query: 59 LPIVQQYIATALGEYPIIKGIITN 82 Q+ + A EYP+ +++ Sbjct: 251 SKKGQEALVAARAEYPLRADVVSP 274 >d1atga_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Azotobacter vinelandii [TaxId: 354]} Length = 231 Score = 28.5 bits (62), Expect = 0.14 Identities = 10/45 (22%), Positives = 17/45 (37%) Query: 30 GNILCSTVGGIAESSKKKSVATQFLRFLLLPIVQQYIATALGEYP 74 I +S+ +K+ A QF+ ++ P I A P Sbjct: 186 YYEPIVQQAVITKSTAEKANAEQFMSWMKGPKAVAIIKAAGYVLP 230 >d1amfa_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Escherichia coli [TaxId: 562]} Length = 231 Score = 24.6 bits (52), Expect = 2.2 Identities = 3/25 (12%), Positives = 6/25 (24%) Query: 43 SSKKKSVATQFLRFLLLPIVQQYIA 67 + F +L P + Sbjct: 200 EGHNNATVKAFYDYLKGPQAAEIFK 224 >d1j7qa_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Length = 86 Score = 24.4 bits (52), Expect = 3.0 Identities = 9/18 (50%), Positives = 13/18 (72%) Query: 88 QTYTNRESFELIKTAQNP 105 QTYT RE+ ++K A+ P Sbjct: 45 QTYTKRETEAIMKEARGP 62 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.318 0.133 0.374 Gapped Lambda K H 0.267 0.0575 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 353,518 Number of extensions: 13233 Number of successful extensions: 29 Number of sequences better than 10.0: 1 Number of HSP's gapped: 29 Number of HSP's successfully gapped: 13 Length of query: 107 Length of database: 2,407,596 Length adjustment: 67 Effective length of query: 40 Effective length of database: 1,487,686 Effective search space: 59507440 Effective search space used: 59507440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.2 bits)