BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780564|ref|YP_003064977.1| hypothetical protein
CLIBASIA_02255 [Candidatus Liberibacter asiaticus str. psy62]
         (107 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780564|ref|YP_003064977.1| hypothetical protein CLIBASIA_02255 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 107

 Score =  219 bits (559), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 1   MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLP 60
           MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLP
Sbjct: 1   MINASSVAIFKNHHSEVSVSYTPFLPKDIGNILCSTVGGIAESSKKKSVATQFLRFLLLP 60

Query: 61  IVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPPK 107
           IVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPPK
Sbjct: 61  IVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELIKTAQNPPK 107


>gi|254780183|ref|YP_003064596.1| single-strand binding protein (ssb) [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 159

 Score = 29.3 bits (64), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 58  LLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELI 99
           L  IV+QY+      Y  I+G +  RK+ DQ+  NR + E+I
Sbjct: 64  LCRIVEQYLRKGSKVY--IEGSLQTRKWQDQSGNNRYTTEII 103


>gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine
          decarboxylase/phosphopantothenate synthase [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 405

 Score = 21.9 bits (45), Expect = 3.0,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 74 PIIKGIITNRKFNDQTYTNRESFE 97
          P+I G I+NR+      + +E +E
Sbjct: 49 PLIVGAISNRRVYTHLLSYKEGYE 72


>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 976

 Score = 21.6 bits (44), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 33 LCSTVGGIAESSKKKSVATQFLRFLLLPIV 62
           C+ +  + ++S+K+S+A+ F      P V
Sbjct: 41 FCNMLWKLLQNSRKESIASHFAVIFDYPAV 70


>gi|254780846|ref|YP_003065259.1| bifunctional riboflavin kinase/FMN adenylyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 324

 Score = 20.8 bits (42), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 63  QQYIATALGEYPIIKGIITNRKF 85
           +Q+I   L E+  +K +IT  KF
Sbjct: 105 EQFIQKVLVEWLEVKTVITGTKF 127


>gi|254780902|ref|YP_003065315.1| isocitrate dehydrogenase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 412

 Score = 20.8 bits (42), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 8   AIFKNHHSEVSVSYTPFLPKDI 29
           A FKN   E+ ++YT  L  D+
Sbjct: 231 AEFKNQFDELGITYTHRLIDDM 252


>gi|254780442|ref|YP_003064855.1| pyruvate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 480

 Score = 20.0 bits (40), Expect = 9.9,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 27  KDIGNILCSTVGGIAESSKK 46
           K IG I C  + GI+ + +K
Sbjct: 138 KGIGFIKCKVIAGISIADRK 157


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.133    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,655
Number of Sequences: 1233
Number of extensions: 2149
Number of successful extensions: 8
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 107
length of database: 328,796
effective HSP length: 62
effective length of query: 45
effective length of database: 252,350
effective search space: 11355750
effective search space used: 11355750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)