Query gi|254780565|ref|YP_003064978.1| hypothetical protein CLIBASIA_02260 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 69
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Sun May 29 21:54:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780565.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 pfam02060 ISK_Channel Slow vol 60.4 12 0.0003 19.3 3.5 45 22-66 10-66 (129)
2 pfam09410 consensus 49.4 4.3 0.00011 21.6 -0.2 37 3-39 273-313 (324)
3 TIGR02021 BchM-ChlM magnesium 38.4 9.4 0.00024 19.8 0.1 42 15-56 182-223 (224)
4 pfam11188 DUF2975 Protein of u 33.7 40 0.001 16.5 2.7 42 24-65 1-42 (93)
5 pfam06837 Fijivirus_P9-2 Fijiv 27.8 20 0.00051 18.1 0.4 19 12-30 57-75 (214)
6 PRK03745 signal recognition pa 22.1 19 0.00049 18.2 -0.6 29 18-46 50-80 (100)
7 pfam06796 NapE Periplasmic nit 21.4 80 0.002 14.9 2.5 26 44-69 17-42 (55)
8 KOG0499 consensus 21.2 77 0.002 15.0 2.3 18 46-63 426-443 (815)
9 KOG2678 consensus 20.2 85 0.0022 14.8 2.9 32 30-61 197-230 (244)
10 COG5278 Predicted periplasmic 19.1 91 0.0023 14.6 3.1 31 37-68 3-33 (207)
No 1
>pfam02060 ISK_Channel Slow voltage-gated potassium channel.
Probab=60.35 E-value=12 Score=19.33 Aligned_cols=45 Identities=27% Similarity=0.657 Sum_probs=30.3
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHCCH--------HHHHHHHHHHHH----HHHHHHH
Q ss_conf 37777762553114661001120023--------799999999999----9999985
Q gi|254780565|r 22 TRLYRRYWEGEYKTSGRVSSFKKSSF--------GFYIVMLLSFFA----GVLVSFF 66 (69)
Q Consensus 22 trlyrrywegeyktsgrvssfkkssf--------gfyivmllsffa----gvlvsff 66 (69)
+-+....|+|.-...|.+|....++- ..||.|++.||. |+++|+.
T Consensus 10 ~pfL~~l~q~t~~q~~n~s~larr~p~~~dg~le~lYiLmvlGfFgFft~GImlsyi 66 (129)
T pfam02060 10 MPFLTTLWQETAHQGGNSSGLARRSPLGDDGKLEALYILMVLGFFGFFTLGIMLSYI 66 (129)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 889999999888528875655567889998602688999999999999999999999
No 2
>pfam09410 consensus
Probab=49.40 E-value=4.3 Score=21.63 Aligned_cols=37 Identities=32% Similarity=0.592 Sum_probs=29.1
Q ss_pred CCEECCCHHHCCEEE----EHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 320026622401000----0013377777625531146610
Q gi|254780565|r 3 QTRLSIPKSRMNLAV----EDKETRLYRRYWEGEYKTSGRV 39 (69)
Q Consensus 3 qtrlsipksrmnlav----edketrlyrrywegeyktsgrv 39 (69)
+=++.||+..+++.| .|.|-..-..||||-.+.+|.-
T Consensus 273 ~W~l~ip~~~~~l~v~p~~~dQel~~~~~YWEG~v~v~G~~ 313 (324)
T pfam09410 273 RWRLEIPSRGLDLTIEALNPDQEMDTGFPYWEGPVTVTGSH 313 (324)
T ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEE
T ss_conf 58999679894799998883678777962423207970456
No 3
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=38.42 E-value=9.4 Score=19.82 Aligned_cols=42 Identities=33% Similarity=0.271 Sum_probs=25.6
Q ss_pred EEEEHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHH
Q ss_conf 000001337777762553114661001120023799999999
Q gi|254780565|r 15 LAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLS 56 (69)
Q Consensus 15 lavedketrlyrrywegeyktsgrvssfkkssfgfyivmlls 56 (69)
-+.--+++.+-|--=+-|---.=++++-++-|+|||+-||+.
T Consensus 182 ~~~~h~~~~~~R~l~~~eallG~~i~~~~~vS~gFY~S~llE 223 (224)
T TIGR02021 182 AIYLHPEKDLERALGELEALLGWKISKEGRVSTGFYISMLLE 223 (224)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCEEEEECCEEHHHHHHHHHC
T ss_conf 152078603889976676663315663110322435567532
No 4
>pfam11188 DUF2975 Protein of unknown function (DUF2975). This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=33.71 E-value=40 Score=16.50 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=34.7
Q ss_pred HHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 777762553114661001120023799999999999999998
Q gi|254780565|r 24 LYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAGVLVSF 65 (69)
Q Consensus 24 lyrrywegeyktsgrvssfkkssfgfyivmllsffagvlvsf 65 (69)
|+|+|-.|++=+...+..+++-..+.-+--+++.+.+.+.|.
T Consensus 1 LF~~y~~G~iFs~~n~~~l~~ig~~li~~~~~~~l~~~l~sl 42 (93)
T pfam11188 1 LFRLYARGEVFSEENARLLQRIGLLLLAWALLSPLYGTLLSL 42 (93)
T ss_pred CHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 965750877435999999999999999999999999999999
No 5
>pfam06837 Fijivirus_P9-2 Fijivirus P9-2 protein. This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=27.75 E-value=20 Score=18.10 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=15.1
Q ss_pred HCCEEEEHHHHHHHHHHHC
Q ss_conf 4010000013377777625
Q gi|254780565|r 12 RMNLAVEDKETRLYRRYWE 30 (69)
Q Consensus 12 rmnlavedketrlyrrywe 30 (69)
....+|||+-+.+.||++.
T Consensus 57 ~lE~~ve~~~~pl~~r~yg 75 (214)
T pfam06837 57 TLETAVEDTPTPLFKRAYG 75 (214)
T ss_pred HHHHHHHHCCCHHHHHHCC
T ss_conf 8867677287688887526
No 6
>PRK03745 signal recognition particle protein Srp19; Provisional
Probab=22.12 E-value=19 Score=18.17 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=20.2
Q ss_pred EHHHHHHHHHHH--CCCCCCCCCCHHHHHCC
Q ss_conf 001337777762--55311466100112002
Q gi|254780565|r 18 EDKETRLYRRYW--EGEYKTSGRVSSFKKSS 46 (69)
Q Consensus 18 edketrlyrryw--egeyktsgrvssfkkss 46 (69)
+-.+..+|-|+| +-+|.++|||---+..+
T Consensus 50 ~ve~~k~yPr~~~~~e~~~~~GrV~Ve~~~~ 80 (100)
T PRK03745 50 EVEEEKLNPRLSGIDEELRTYGMIRIESPYG 80 (100)
T ss_pred ECCCCCCCCCCCCCCHHHHHCEEEEEECCCC
T ss_conf 3252344876445404546162699954876
No 7
>pfam06796 NapE Periplasmic nitrate reductase protein NapE. This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides f. sp. denitrificans IL106. NapE is thought to be a transmembrane protein.
Probab=21.40 E-value=80 Score=14.92 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=21.8
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 00237999999999999999985129
Q gi|254780565|r 44 KSSFGFYIVMLLSFFAGVLVSFFGLI 69 (69)
Q Consensus 44 kssfgfyivmllsffagvlvsffgli 69 (69)
--+|.|-++.|....+-.+|+-+|+|
T Consensus 17 l~~f~fl~~~l~PiLsV~~V~~YGf~ 42 (55)
T pfam06796 17 LKAFLFLTVVLFPILSVAFVGGYGFI 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999998999
No 8
>KOG0499 consensus
Probab=21.23 E-value=77 Score=15.00 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 237999999999999999
Q gi|254780565|r 46 SFGFYIVMLLSFFAGVLV 63 (69)
Q Consensus 46 sfgfyivmllsffagvlv 63 (69)
..+-|+.|++++|.||.|
T Consensus 426 ~~~E~Vf~~~~w~mGVFv 443 (815)
T KOG0499 426 TLFEIVFQLLNWFMGVFV 443 (815)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 699999999999999999
No 9
>KOG2678 consensus
Probab=20.21 E-value=85 Score=14.78 Aligned_cols=32 Identities=34% Similarity=0.586 Sum_probs=20.0
Q ss_pred CCCCCCCCCCHHHHHC--CHHHHHHHHHHHHHHH
Q ss_conf 5531146610011200--2379999999999999
Q gi|254780565|r 30 EGEYKTSGRVSSFKKS--SFGFYIVMLLSFFAGV 61 (69)
Q Consensus 30 egeyktsgrvssfkks--sfgfyivmllsffagv 61 (69)
+|--..|+||-++.|| |+-|||.|+.-.+-+.
T Consensus 197 ~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sF 230 (244)
T KOG2678 197 QGLMDVSERVEKYDKSKLSYWFYITMIIFVILSF 230 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8887666789988786336799999999999999
No 10
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=19.09 E-value=91 Score=14.64 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=23.1
Q ss_pred CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 61001120023799999999999999998512
Q gi|254780565|r 37 GRVSSFKKSSFGFYIVMLLSFFAGVLVSFFGL 68 (69)
Q Consensus 37 grvssfkkssfgfyivmllsffagvlvsffgl 68 (69)
+|.+..+|++++|-+++++-+-++ .+||+++
T Consensus 3 ~~~~i~~Ki~~~f~~~~ll~~~~~-~~s~~~~ 33 (207)
T COG5278 3 KRMPIRKKIILSFVIGVLLLLLAS-GASYWSI 33 (207)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_conf 865478899999999999999999-9999999
Done!