Query gi|254780565|ref|YP_003064978.1| hypothetical protein CLIBASIA_02260 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 69
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 16:10:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780565.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2k21_A Potassium voltage-gate 20.4 68 0.002 15.0 2.3 19 46-64 51-69 (90)
2 >1o75_A 47 kDa membrane antige 13.5 54 0.0016 15.5 0.4 18 22-39 14-31 (85)
3 >1g3p_A G3P, minor coat protei 11.6 1E+02 0.003 14.0 1.3 18 22-39 62-79 (82)
4 >1r3h_A MHC H2-TL-T10-129; cla 9.1 95 0.0028 14.2 0.4 29 5-33 120-148 (162)
5 >2ich_A Putative ATTH; NP_8414 8.1 32 0.00096 16.7 -2.3 35 4-38 74-114 (134)
6 >1r9d_A Glycerol dehydratase; 7.8 97 0.0029 14.1 -0.0 13 24-36 98-110 (216)
7 >2cio_B Inhibitor of cysteine 7.7 75 0.0022 14.7 -0.7 10 24-33 98-107 (121)
8 >2wbn_A G2P, terminase large s 5.4 1.6E+02 0.0047 13.0 0.0 25 16-40 3-30 (212)
9 >2ou2_A Histone acetyltransfer 5.4 2.1E+02 0.0061 12.4 0.6 13 19-31 31-43 (129)
10 >2gai_A DNA topoisomerase I; z 5.3 1.8E+02 0.0052 12.8 0.2 14 7-20 4-17 (27)
No 1
>>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens} (A:1-90)
Probab=20.44 E-value=68 Score=14.96 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 2379999999999999999
Q gi|254780565|r 46 SFGFYIVMLLSFFAGVLVS 64 (69)
Q Consensus 46 sfgfyivmllsffagvlvs 64 (69)
.--+||.+.++||+=.+++
T Consensus 51 naylYIL~Vm~ffgff~~g 69 (90)
T 2k21_A 51 LEALYVLMVLGFFGFFTLG 69 (90)
T ss_dssp STTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 3157999999999999999
No 2
>>1o75_A 47 kDa membrane antigen; LIPOPROTEINULLNTIGEN, penicillin-binding protein, integral membrane lipoprotein, immunogen, four-domain protein; HET: PDX; 1.95A {Treponema pallidum} (A:1-34,A:157-207)
Probab=13.52 E-value=54 Score=15.48 Aligned_cols=18 Identities=44% Similarity=0.750 Sum_probs=13.7
Q ss_pred HHHHHHHHCCCCCCCCCC
Q ss_conf 377777625531146610
Q gi|254780565|r 22 TRLYRRYWEGEYKTSGRV 39 (69)
Q Consensus 22 trlyrrywegeyktsgrv 39 (69)
|--|..||.||...|..|
T Consensus 14 tlsyadywagelgqsrdv 31 (85)
T 1o75_A 14 TLSYADYWAGELGQSRDV 31 (85)
T ss_dssp EEEHHHHHHHHHTCCTGG
T ss_pred EEEHHHHHHHCCCCCCCC
T ss_conf 620999752034512464
No 3
>>1g3p_A G3P, minor coat protein; filamentous bacteriophage, phage display, selectively infective phages, viral protein; HET: TRO; 1.46A {Enterobacteria phage M13} (A:113-194)
Probab=11.59 E-value=1e+02 Score=14.04 Aligned_cols=18 Identities=22% Similarity=0.798 Sum_probs=12.9
Q ss_pred HHHHHHHHCCCCCCCCCC
Q ss_conf 377777625531146610
Q gi|254780565|r 22 TRLYRRYWEGEYKTSGRV 39 (69)
Q Consensus 22 trlyrrywegeyktsgrv 39 (69)
...|..||.|.+....--
T Consensus 62 kamydaywngkfrd~afh 79 (82)
T 1g3p_A 62 KAMYDAYWNGKFRDCAFH 79 (82)
T ss_dssp HHHHHHHHTTTTTTTSCC
T ss_pred HHHHHHHHCCCCCCCEEC
T ss_conf 777776635751123001
No 4
>>1r3h_A MHC H2-TL-T10-129; class IB MHC, gammadelta T cell ligand, immune system; 2.50A {Mus musculus} (A:1-162)
Probab=9.12 E-value=95 Score=14.18 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=19.4
Q ss_pred EECCCHHHCCEEEEHHHHHHHHHHHCCCC
Q ss_conf 00266224010000013377777625531
Q gi|254780565|r 5 RLSIPKSRMNLAVEDKETRLYRRYWEGEY 33 (69)
Q Consensus 5 rlsipksrmnlavedketrlyrrywegey 33 (69)
-++.-...++..+.+.+....+.|||++-
T Consensus 120 ~l~ld~~~~~Wt~~~~~A~~~k~~~e~~C 148 (162)
T 1r3h_A 120 LPTLSENPSSCTVGNSTVPQISQHLEGHC 148 (162)
T ss_dssp ECCSSCSSCCCC----------CCGGGSH
T ss_pred EEEECCCHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 13306762432211689999999987779
No 5
>>2ich_A Putative ATTH; NP_841447.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; HET: NHE; 2.00A {Nitrosomonas europaea} (A:202-335)
Probab=8.12 E-value=32 Score=16.65 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=24.2
Q ss_pred CEECCCHHHCCEEE--EHHHH----HHHHHHHCCCCCCCCC
Q ss_conf 20026622401000--00133----7777762553114661
Q gi|254780565|r 4 TRLSIPKSRMNLAV--EDKET----RLYRRYWEGEYKTSGR 38 (69)
Q Consensus 4 trlsipksrmnlav--edket----rlyrrywegeyktsgr 38 (69)
=++.||+-.+++.+ +|.|- ..--.||||--+.+|+
T Consensus 74 W~i~ip~~~~~v~~~~~dQE~~~~~~~~~~YWEG~V~v~g~ 114 (134)
T 2ich_A 74 TRVLTGETEWQITPLXDDQELDSRASAGAVYWEGAVTFTRD 114 (134)
T ss_dssp EEEEETTEEEEEEESCSCCEEECTTBTCCEEEEEEEEEEET
T ss_pred EEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEC
T ss_conf 89844885169975564536343346684346612898048
No 6
>>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium butyricum} (A:24-128,A:168-278)
Probab=7.76 E-value=97 Score=14.14 Aligned_cols=13 Identities=31% Similarity=0.772 Sum_probs=9.4
Q ss_pred HHHHHHCCCCCCC
Q ss_conf 7777625531146
Q gi|254780565|r 24 LYRRYWEGEYKTS 36 (69)
Q Consensus 24 lyrrywegeykts 36 (69)
----||+|.|.+-
T Consensus 98 ei~pyW~gDY~kl 110 (216)
T 1r9d_A 98 DVFEYWNGDYGKV 110 (216)
T ss_dssp HHHHHTTTCHHHH
T ss_pred HHHHHHCCCHHHH
T ss_conf 9637755888999
No 7
>>2cio_B Inhibitor of cysteine peptidase; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Trypanosoma brucei} (B:)
Probab=7.67 E-value=75 Score=14.75 Aligned_cols=10 Identities=40% Similarity=0.693 Sum_probs=7.4
Q ss_pred HHHHHHCCCC
Q ss_conf 7777625531
Q gi|254780565|r 24 LYRRYWEGEY 33 (69)
Q Consensus 24 lyrrywegey 33 (69)
.|.|.||++-
T Consensus 98 ~Y~RpWE~~~ 107 (121)
T 2cio_B 98 AYGRPWVGFN 107 (121)
T ss_pred EEECCCCCCC
T ss_conf 9989768998
No 8
>>2wbn_A G2P, terminase large subunit; large terminase, nuclease, viral protein, DNA packaging; 1.90A {Bacillus phage SPP1} PDB: 2wc9_A (A:)
Probab=5.36 E-value=1.6e+02 Score=13.02 Aligned_cols=25 Identities=4% Similarity=-0.197 Sum_probs=16.2
Q ss_pred EEEHHHHHHHHHHHCCCCCC---CCCCH
Q ss_conf 00001337777762553114---66100
Q gi|254780565|r 16 AVEDKETRLYRRYWEGEYKT---SGRVS 40 (69)
Q Consensus 16 avedketrlyrrywegeykt---sgrvs 40 (69)
|...+..+.|+++|+|++-. .|.|-
T Consensus 3 a~k~~dp~~y~~~~~G~~~~~~~~g~vy 30 (212)
T 2wbn_A 3 SSHHHHHHSSGLVPRGSHXALGSGVVPF 30 (212)
T ss_dssp ------------------------CCSC
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCEEEC
T ss_conf 6544433345601268747751542505
No 9
>>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} (A:152-280)
Probab=5.36 E-value=2.1e+02 Score=12.40 Aligned_cols=13 Identities=38% Similarity=0.762 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 0133777776255
Q gi|254780565|r 19 DKETRLYRRYWEG 31 (69)
Q Consensus 19 dketrlyrryweg 31 (69)
|---..||+||..
T Consensus 31 dLG~~sY~~YW~~ 43 (129)
T 2ou2_A 31 DLGLLSYRSYWSQ 43 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 7899999999999
No 10
>>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima MSB8} PDB: 2gaj_A* (A:36-62)
Probab=5.31 E-value=1.8e+02 Score=12.77 Aligned_cols=14 Identities=29% Similarity=0.688 Sum_probs=10.9
Q ss_pred CCCHHHCCEEEEHH
Q ss_conf 26622401000001
Q gi|254780565|r 7 SIPKSRMNLAVEDK 20 (69)
Q Consensus 7 sipksrmnlavedk 20 (69)
..|||+|...+|..
T Consensus 4 DLPks~lGVDien~ 17 (27)
T 2gai_A 4 DLPKSKFGVDLEKD 17 (27)
T ss_dssp ESCSSSCCEETTTT
T ss_pred CCCCCCCCCCCCCC
T ss_conf 78985569883437
Done!