Query gi|254780565|ref|YP_003064978.1| hypothetical protein CLIBASIA_02260 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 69
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 18:55:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780565.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k21_A Potassium voltage-gated 30.9 17 0.0007 17.4 1.5 53 13-65 10-74 (138)
2 2ytx_A Cold shock domain-conta 8.5 34 0.0014 15.7 -1.3 19 31-50 15-33 (97)
3 1g3p_A G3P, minor coat protein 7.8 1.1E+02 0.0047 13.0 1.1 26 22-47 174-199 (217)
4 2ytv_A Cold shock domain-conta 7.5 35 0.0015 15.7 -1.6 13 36-49 10-22 (79)
5 2cio_B Inhibitor of cysteine p 6.5 66 0.0028 14.2 -0.6 10 24-33 98-107 (121)
6 1srq_A RAP1GAP, GTPase-activat 6.3 1.5E+02 0.0064 12.3 1.3 17 16-32 6-23 (341)
7 2h7w_A Chagasin; beta-strands, 6.2 70 0.0029 14.1 -0.7 12 24-35 109-120 (131)
8 3be3_A Uncharacterized protein 5.7 43 0.0018 15.2 -1.9 26 13-38 1-26 (91)
9 1nkw_Y 50S ribosomal protein L 5.4 1.3E+02 0.0054 12.7 0.3 20 26-45 40-62 (73)
10 2ich_A Putative ATTH; structur 5.1 50 0.0021 14.9 -1.9 33 4-36 275-313 (335)
No 1
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=30.93 E-value=17 Score=17.36 Aligned_cols=53 Identities=25% Similarity=0.597 Sum_probs=31.0
Q ss_pred CCEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHC--------CHHHHHHHHHHHHH----HHHHHH
Q ss_conf 010000013377777625531146610011200--------23799999999999----999998
Q gi|254780565|r 13 MNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKS--------SFGFYIVMLLSFFA----GVLVSF 65 (69)
Q Consensus 13 mnlavedketrlyrrywegeyktsgrvssfkks--------sfgfyivmllsffa----gvlvsf 65 (69)
|+|.-...-.-+.-..|+|--..++.+++-... .--+||.+++.||+ |+++|+
T Consensus 10 milsN~Tav~~fL~~l~q~~~~q~~~~sa~~~~~p~~~d~~~~~lYIL~vmgffgff~~gImlsy 74 (138)
T 2k21_A 10 MILSNTTAVTPFLTKLWQETVQQGGNMSGLARRSPRSGDGKLEALYVLMVLGFFGFFTLGIMLSY 74 (138)
T ss_dssp CTTHHHHHHCTTHHHHHHHHHHTCCTTSSGGGSCSCCTTCSSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00267147899999998632357786787666689999985226799999999999999999987
No 2
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=8.46 E-value=34 Score=15.72 Aligned_cols=19 Identities=32% Similarity=0.649 Sum_probs=13.4
Q ss_pred CCCCCCCCCHHHHHCCHHHH
Q ss_conf 53114661001120023799
Q gi|254780565|r 31 GEYKTSGRVSSFKKSSFGFY 50 (69)
Q Consensus 31 geyktsgrvssfkkssfgfy 50 (69)
.+-+..|+|.+||+ .|||-
T Consensus 15 ~~~r~~G~I~~~k~-GfGFI 33 (97)
T 2ytx_A 15 KQARCQGVVCAMKE-AFGFI 33 (97)
T ss_dssp CCCCEEEEECCCCS-SEEEE
T ss_pred CCCEEEEEEEEEEC-CEEEE
T ss_conf 56378899989938-18189
No 3
>1g3p_A G3P, minor coat protein; filamentous bacteriophage, phage display, selectively infective phages, viral protein; HET: TRO; 1.46A {Enterobacteria phage M13} SCOP: b.37.1.1 b.37.1.1 PDB: 2g3p_A 3dgs_A 3knq_A 1fgp_A
Probab=7.76 E-value=1.1e+02 Score=12.99 Aligned_cols=26 Identities=27% Similarity=0.774 Sum_probs=19.1
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHCCH
Q ss_conf 37777762553114661001120023
Q gi|254780565|r 22 TRLYRRYWEGEYKTSGRVSSFKKSSF 47 (69)
Q Consensus 22 trlyrrywegeyktsgrvssfkkssf 47 (69)
..+|..||.|.+....--|.|...-|
T Consensus 174 kamydaywngkfrdcafhsgfnedif 199 (217)
T 1g3p_A 174 KAMYDAYWNGKFRDCAFHSGFNEDIF 199 (217)
T ss_dssp HHHHHHHHTTTTTTTSCCCSSCCCCE
T ss_pred HHHHHHHHCCCCCCCEECCCCCCCEE
T ss_conf 76677663574112300156776358
No 4
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=7.50 E-value=35 Score=15.67 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=8.1
Q ss_pred CCCCHHHHHCCHHH
Q ss_conf 66100112002379
Q gi|254780565|r 36 SGRVSSFKKSSFGF 49 (69)
Q Consensus 36 sgrvssfkkssfgf 49 (69)
.|+|.|+|+ .|||
T Consensus 10 ~G~v~s~k~-gfGF 22 (79)
T 2ytv_A 10 RATVECVKD-QFGF 22 (79)
T ss_dssp CEEEEECCS-SEEE
T ss_pred EEEEEEECC-CEEE
T ss_conf 899989459-7117
No 5
>2cio_B Inhibitor of cysteine peptidase; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Trypanosoma brucei}
Probab=6.48 E-value=66 Score=14.22 Aligned_cols=10 Identities=40% Similarity=0.693 Sum_probs=7.3
Q ss_pred HHHHHHCCCC
Q ss_conf 7777625531
Q gi|254780565|r 24 LYRRYWEGEY 33 (69)
Q Consensus 24 lyrrywegey 33 (69)
.|+|-||++-
T Consensus 98 ~Y~RpWE~~~ 107 (121)
T 2cio_B 98 AYGRPWVGFN 107 (121)
T ss_pred EEECCCCCCC
T ss_conf 9978868998
No 6
>1srq_A RAP1GAP, GTPase-activating protein 1; mixed alpha-beta, signaling protein; 2.90A {Homo sapiens} SCOP: e.55.1.1 PDB: 3brw_A*
Probab=6.30 E-value=1.5e+02 Score=12.30 Aligned_cols=17 Identities=29% Similarity=0.710 Sum_probs=11.4
Q ss_pred EEE-HHHHHHHHHHHCCC
Q ss_conf 000-01337777762553
Q gi|254780565|r 16 AVE-DKETRLYRRYWEGE 32 (69)
Q Consensus 16 ave-dketrlyrrywege 32 (69)
..| |.++|.||+|.-|.
T Consensus 6 ~~e~~~~~~~Y~~~F~gk 23 (341)
T 1srq_A 6 KLECNPTARIYRKHFLGK 23 (341)
T ss_dssp CCCSCGGGGHHHHHTTTS
T ss_pred EEECCCCCCHHHHHCCCC
T ss_conf 441488848757647898
No 7
>2h7w_A Chagasin; beta-strands, immunoglobulin-fold, hydrolase inhibitor; 1.70A {Trypanosoma cruzi} SCOP: b.1.26.1 PDB: 2nnr_A 2oul_B 3cbj_B 3cbk_B 3e1z_A 2fo8_A 2nqd_A*
Probab=6.16 E-value=70 Score=14.09 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=7.7
Q ss_pred HHHHHHCCCCCC
Q ss_conf 777762553114
Q gi|254780565|r 24 LYRRYWEGEYKT 35 (69)
Q Consensus 24 lyrrywegeykt 35 (69)
.|+|-||++-..
T Consensus 109 ~Y~RpWE~~~~~ 120 (131)
T 2h7w_A 109 TYMRPWTGPSHD 120 (131)
T ss_dssp EEECTTTCCCTT
T ss_pred EEECCCCCCCCC
T ss_conf 997887899887
No 8
>3be3_A Uncharacterized protein; PFAM DUF1653, PSI-2, structural genomics, protein structure initiative; 2.04A {Bordetella bronchiseptica RB50}
Probab=5.74 E-value=43 Score=15.21 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=19.8
Q ss_pred CCEEEEHHHHHHHHHHHCCCCCCCCC
Q ss_conf 01000001337777762553114661
Q gi|254780565|r 13 MNLAVEDKETRLYRRYWEGEYKTSGR 38 (69)
Q Consensus 13 mnlavedketrlyrrywegeyktsgr 38 (69)
|.||..|.....||-|--+.|..-|-
T Consensus 1 m~~~m~~~kpG~YrHyKG~~Y~Vl~v 26 (91)
T 3be3_A 1 MSLAMQDFRPGVYRHYKGDHYLALGL 26 (91)
T ss_dssp ----CTTCCCEEEEETTSCEEEEEEE
T ss_pred CCCCCCCCCCCCEEECCCCEEEEEEE
T ss_conf 94331456787148428998999999
No 9
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=5.38 E-value=1.3e+02 Score=12.70 Aligned_cols=20 Identities=45% Similarity=0.964 Sum_probs=14.8
Q ss_pred HHHHCCCCC---CCCCCHHHHHC
Q ss_conf 776255311---46610011200
Q gi|254780565|r 26 RRYWEGEYK---TSGRVSSFKKS 45 (69)
Q Consensus 26 rrywegeyk---tsgrvssfkks 45 (69)
.-+|-|+-+ |.|||..|++-
T Consensus 40 HPfyTGkq~~vdt~GRVekF~kr 62 (73)
T 1nkw_Y 40 HPFWTGEERFLDTEGRVDKFNKR 62 (73)
T ss_pred CCCEECCEEEEECCCCHHHHHHH
T ss_conf 77181878887236509999998
No 10
>2ich_A Putative ATTH; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: NHE; 2.00A {Nitrosomonas europaea} SCOP: b.176.1.1
Probab=5.11 E-value=50 Score=14.85 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=18.8
Q ss_pred CEECCCHHHCCEE--EEHHHHH----HHHHHHCCCCCCC
Q ss_conf 2002662240100--0001337----7777625531146
Q gi|254780565|r 4 TRLSIPKSRMNLA--VEDKETR----LYRRYWEGEYKTS 36 (69)
Q Consensus 4 trlsipksrmnla--vedketr----lyrrywegeykts 36 (69)
-|+.+|+-.+++. ++|.|-. .-..||||-.+.+
T Consensus 275 w~i~~~~~~l~i~~~~~~QEl~~~~~~~~~YWEG~v~v~ 313 (335)
T 2ich_A 275 TRVLTGETEWQITPLMDDQELDSRASAGAVYWEGAVTFT 313 (335)
T ss_dssp EEEEETTEEEEEEESCSCCEEECTTBTCCEEEEEEEEEE
T ss_pred EEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf 899448852699755656363533477843577448995
Done!