BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780565|ref|YP_003064978.1| hypothetical protein
CLIBASIA_02260 [Candidatus Liberibacter asiaticus str. psy62]
         (69 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780565|ref|YP_003064978.1| hypothetical protein CLIBASIA_02260 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040242|gb|ACT57038.1| hypothetical protein CLIBASIA_02260 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 69

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/69 (100%), Positives = 69/69 (100%)

Query: 1  MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG 60
          MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG
Sbjct: 1  MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG 60

Query: 61 VLVSFFGLI 69
          VLVSFFGLI
Sbjct: 61 VLVSFFGLI 69


>gi|315121759|ref|YP_004062248.1| hypothetical protein CKC_00045 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495161|gb|ADR51760.1| hypothetical protein CKC_00045 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 69

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 57/69 (82%)

Query: 1  MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG 60
          M QTRLS+PKSR+NLA EDKE RLYRRYWEGEYK+S      KKSS GFYI++++SFFAG
Sbjct: 1  MDQTRLSVPKSRINLAAEDKEMRLYRRYWEGEYKSSCHAPDSKKSSLGFYILIVVSFFAG 60

Query: 61 VLVSFFGLI 69
          VL SFFG +
Sbjct: 61 VLFSFFGFL 69


Searching..................................................done


Results from round 2





CONVERGED!
>gi|315121759|ref|YP_004062248.1| hypothetical protein CKC_00045 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495161|gb|ADR51760.1| hypothetical protein CKC_00045 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 69

 Score =  116 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/69 (71%), Positives = 57/69 (82%)

Query: 1  MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG 60
          M QTRLS+PKSR+NLA EDKE RLYRRYWEGEYK+S      KKSS GFYI++++SFFAG
Sbjct: 1  MDQTRLSVPKSRINLAAEDKEMRLYRRYWEGEYKSSCHAPDSKKSSLGFYILIVVSFFAG 60

Query: 61 VLVSFFGLI 69
          VL SFFG +
Sbjct: 61 VLFSFFGFL 69


>gi|254780565|ref|YP_003064978.1| hypothetical protein CLIBASIA_02260 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040242|gb|ACT57038.1| hypothetical protein CLIBASIA_02260 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 69

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 69/69 (100%), Positives = 69/69 (100%)

Query: 1  MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG 60
          MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG
Sbjct: 1  MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG 60

Query: 61 VLVSFFGLI 69
          VLVSFFGLI
Sbjct: 61 VLVSFFGLI 69


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.320    0.145    0.426 

Lambda     K      H
   0.267   0.0444    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,324,494,904
Number of Sequences: 14124377
Number of extensions: 44363834
Number of successful extensions: 171599
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 171595
Number of HSP's gapped (non-prelim): 6
length of query: 69
length of database: 4,842,793,630
effective HSP length: 41
effective length of query: 28
effective length of database: 4,263,694,173
effective search space: 119383436844
effective search space used: 119383436844
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 76 (33.8 bits)