BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780565|ref|YP_003064978.1| hypothetical protein CLIBASIA_02260 [Candidatus Liberibacter asiaticus str. psy62] (69 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780565|ref|YP_003064978.1| hypothetical protein CLIBASIA_02260 [Candidatus Liberibacter asiaticus str. psy62] gi|254040242|gb|ACT57038.1| hypothetical protein CLIBASIA_02260 [Candidatus Liberibacter asiaticus str. psy62] Length = 69 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 69/69 (100%), Positives = 69/69 (100%) Query: 1 MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG 60 MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG Sbjct: 1 MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG 60 Query: 61 VLVSFFGLI 69 VLVSFFGLI Sbjct: 61 VLVSFFGLI 69 >gi|315121759|ref|YP_004062248.1| hypothetical protein CKC_00045 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495161|gb|ADR51760.1| hypothetical protein CKC_00045 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 69 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 49/69 (71%), Positives = 57/69 (82%) Query: 1 MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG 60 M QTRLS+PKSR+NLA EDKE RLYRRYWEGEYK+S KKSS GFYI++++SFFAG Sbjct: 1 MDQTRLSVPKSRINLAAEDKEMRLYRRYWEGEYKSSCHAPDSKKSSLGFYILIVVSFFAG 60 Query: 61 VLVSFFGLI 69 VL SFFG + Sbjct: 61 VLFSFFGFL 69 Searching..................................................done Results from round 2 CONVERGED! >gi|315121759|ref|YP_004062248.1| hypothetical protein CKC_00045 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495161|gb|ADR51760.1| hypothetical protein CKC_00045 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 69 Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 49/69 (71%), Positives = 57/69 (82%) Query: 1 MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG 60 M QTRLS+PKSR+NLA EDKE RLYRRYWEGEYK+S KKSS GFYI++++SFFAG Sbjct: 1 MDQTRLSVPKSRINLAAEDKEMRLYRRYWEGEYKSSCHAPDSKKSSLGFYILIVVSFFAG 60 Query: 61 VLVSFFGLI 69 VL SFFG + Sbjct: 61 VLFSFFGFL 69 >gi|254780565|ref|YP_003064978.1| hypothetical protein CLIBASIA_02260 [Candidatus Liberibacter asiaticus str. psy62] gi|254040242|gb|ACT57038.1| hypothetical protein CLIBASIA_02260 [Candidatus Liberibacter asiaticus str. psy62] Length = 69 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 69/69 (100%), Positives = 69/69 (100%) Query: 1 MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG 60 MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG Sbjct: 1 MSQTRLSIPKSRMNLAVEDKETRLYRRYWEGEYKTSGRVSSFKKSSFGFYIVMLLSFFAG 60 Query: 61 VLVSFFGLI 69 VLVSFFGLI Sbjct: 61 VLVSFFGLI 69 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.320 0.145 0.426 Lambda K H 0.267 0.0444 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,324,494,904 Number of Sequences: 14124377 Number of extensions: 44363834 Number of successful extensions: 171599 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 171595 Number of HSP's gapped (non-prelim): 6 length of query: 69 length of database: 4,842,793,630 effective HSP length: 41 effective length of query: 28 effective length of database: 4,263,694,173 effective search space: 119383436844 effective search space used: 119383436844 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.2 bits) S2: 76 (33.8 bits)