RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780565|ref|YP_003064978.1| hypothetical protein
CLIBASIA_02260 [Candidatus Liberibacter asiaticus str. psy62]
         (69 letters)



>gnl|CDD|162663 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase.
            This model represents the
           S-adenosylmethionine-dependent O-methyltransferase
           responsible for methylation of magnesium protoporphyrin
           IX. This step is essentiasl for the biosynthesis of both
           chlorophyll and bacteriochlorophyll. This model
           encompasses two closely related clades, from
           cyanobacteria (and plants) where it is called ChlM and
           other photosynthetic bacteria where it is known as BchM.
          Length = 219

 Score = 24.8 bits (54), Expect = 4.7
 Identities = 7/20 (35%), Positives = 9/20 (45%)

Query: 38  RVSSFKKSSFGFYIVMLLSF 57
           ++      S GFY  MLL  
Sbjct: 200 KIVREGLVSTGFYNSMLLEI 219


>gnl|CDD|185058 PRK15103, PRK15103, paraquat-inducible membrane protein A;
           Provisional.
          Length = 419

 Score = 24.6 bits (54), Expect = 5.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)

Query: 57  FFAGVLVSFFGLI 69
           F AGVLVSF  L+
Sbjct: 151 FLAGVLVSFVKLM 163


>gnl|CDD|181966 PRK09581, pleD, response regulator PleD; Reviewed.
          Length = 457

 Score = 24.5 bits (54), Expect = 7.1
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 10  KSRMNLAVEDKETRLY-RRYWEGEYKT 35
           +  + +AV D  T L+ RRY++   K 
Sbjct: 286 EQSIEMAVTDGLTGLHNRRYFDMHLKN 312


>gnl|CDD|178358 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family
           protein.
          Length = 361

 Score = 24.4 bits (53), Expect = 7.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 17  VEDKETRLYRRYWEGEY 33
           V+D+    YRRY  GEY
Sbjct: 323 VDDENPCKYRRYNHGEY 339


>gnl|CDD|149186 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesicle
           transporter.  This family is conserved from plants and
           fungi to humans. Erv46 works in close conjunction with
           Erv41 and together they form a complex which cycles
           between the endoplasmic reticulum and Golgi complex.
           Erv46-41 interacts strongly with the endoplasmic
           reticulum glucosidase II. Mammalian glucosidase II
           comprises a catalytic alpha-subunit and a 58 kDa beta
           subunit, which is required for ER localisation. All
           proteins identified biochemically as Erv41p-Erv46p
           interactors are localized to the early secretory pathway
           and are involved in protein maturation and processing in
           the ER and/or sorting into COPII vesicles for transport
           to the Golgi.
          Length = 221

 Score = 23.8 bits (52), Expect = 9.9
 Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 39  VSSFKKSSFGFYIVMLLSFFAGVLVSFFGLI 69
           +++  + SF  ++  L +   GV  +  GLI
Sbjct: 191 INTEDRQSFSHFLTNLCAIIGGVF-AVAGLI 220


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.326    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,071,287
Number of extensions: 50472
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 27
Length of query: 69
Length of database: 5,994,473
Length adjustment: 40
Effective length of query: 29
Effective length of database: 5,130,153
Effective search space: 148774437
Effective search space used: 148774437
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.0 bits)