RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780565|ref|YP_003064978.1| hypothetical protein
CLIBASIA_02260 [Candidatus Liberibacter asiaticus str. psy62]
         (69 letters)



>2w39_A Putative laminarinase; hydrolase, white ROT fungus,
          glycosyl hydrolase, GH7, GH16, LAM16A, family 16,
          beta-glucan, basidiomycete; HET: NAG BGC LGC; 1.10A
          {Phanerochaete chrysosporium} PDB: 2cl2_A* 2w52_A* (A:)
          Length = 298

 Score = 26.1 bits (56), Expect = 1.8
 Identities = 5/31 (16%), Positives = 9/31 (29%)

Query: 22 TRLYRRYWEGEYKTSGRVSSFKKSSFGFYIV 52
                   G  + S R+ S K  +    + 
Sbjct: 57 DHTTTLSPSGPGRNSVRIRSIKTYTTHVAVF 87


>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase,
           parvulin, cell inner membrane, cell membrane, membrane,
           rotamase, stress response; NMR {Escherichia coli} (A:)
          Length = 102

 Score = 25.2 bits (55), Expect = 2.9
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 37  GRVSSFKKSSFGFYIVMLLSFFAGVLVSF 65
           G++S   KSS GF IV L    A      
Sbjct: 73  GQLSGVIKSSVGFLIVRLDDIQAAHHHHH 101


>2wbn_A G2P, terminase large subunit; large terminase, nuclease,
          viral protein, DNA packaging; 1.90A {Bacillus phage
          SPP1} PDB: 2wc9_A (A:)
          Length = 212

 Score = 24.5 bits (53), Expect = 5.8
 Identities = 2/22 (9%), Positives = 4/22 (18%)

Query: 16 AVEDKETRLYRRYWEGEYKTSG 37
          +              G +   G
Sbjct: 3  SSHHHHHHSSGLVPRGSHXALG 24


>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1,
           phosphorylation; NMR {Arabidopsis thaliana} (A:)
          Length = 139

 Score = 23.8 bits (51), Expect = 8.2
 Identities = 4/20 (20%), Positives = 9/20 (45%)

Query: 37  GRVSSFKKSSFGFYIVMLLS 56
           G +S    +  G +I+   +
Sbjct: 120 GDISDIVDTDSGVHIIKRTA 139


>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase
           domain, ordered linker; 1.60A {Candida albicans}
           (A:62-177)
          Length = 116

 Score = 23.8 bits (51), Expect = 8.2
 Identities = 5/19 (26%), Positives = 11/19 (57%)

Query: 37  GRVSSFKKSSFGFYIVMLL 55
           G VS+  +++ G +I+   
Sbjct: 97  GEVSNIIETNSGVHILQRT 115


>1eq3_A Peptidyl-prolyl CIS/trans isomerase (ppiase); parvulin;
          NMR {Homo sapiens} (A:)
          Length = 96

 Score = 23.7 bits (51), Expect = 9.9
 Identities = 5/26 (19%), Positives = 10/26 (38%)

Query: 30 EGEYKTSGRVSSFKKSSFGFYIVMLL 55
                        K+ FG++I+M+ 
Sbjct: 68 VSGMDKPVFTDPPVKTKFGYHIIMVE 93


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.326    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0586    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 479,382
Number of extensions: 15743
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 6
Length of query: 69
Length of database: 4,956,049
Length adjustment: 36
Effective length of query: 33
Effective length of database: 3,739,069
Effective search space: 123389277
Effective search space used: 123389277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.4 bits)