HHsearch alignment for GI: 254780567 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=98.18 E-value=1.2e-05 Score=54.61 Aligned_cols=168 Identities=17% Similarity=0.215 Sum_probs=89.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC-----CCCHHHHH------------------------HHHHHHHHHHHHHHHH
Q ss_conf 788499987877786889999998627-----62013567------------------------6444546666665334
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSR-----STRFSNIA------------------------KSLDSILIDTRKPVLL 113 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~-----~~~~~~~~------------------------~~~~~~~~~~~~~i~i 113 (246)
T Consensus 538 PigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hsvsrLIGaPPGYVGy~eGG~LTeaVrr~PysVvLf 617 (823)
T CHL00095 538 PIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLF 617 (823)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEEEEE
T ss_conf 74689987899887799999999997478202588535101554207674589987667787882019887199869986
Q ss_pred HHHHCCCCC-CHHHHHHHHHHH----------CCCCCEEEEECCCCCCH-------------------------------
Q ss_conf 332100376-103354555431----------12342156403543200-------------------------------
Q gi|254780567|r 114 EDIDLLDFN-DTQLFHIINSIH----------QYDSSLLMTARTFPVSW------------------------------- 151 (246)
Q Consensus 114 ddi~~~~~~-ee~lf~l~n~~~----------~~~~~iilts~~~p~~~------------------------------- 151 (246)
T Consensus 618 DEIEKAHpdV~nilLQvlDdG~LtD~~Gr~vdF~NtIIImTSNlGs~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~v~ 697 (823)
T CHL00095 618 DEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIEKGGGSLGFKLLEDGTKLDEKQYKRLSNLVN 697 (823)
T ss_pred CHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEECEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 21311388999988765168843489999884310399971650558887413443433344543220235899999999
Q ss_pred ----HHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHH-------HHHCCCC--CCHHHHHHHHHCCCCC---HHHHHHH
Q ss_conf ----2234566788521222450788978999999998-------6662897--9889999999406679---8999999
Q gi|254780567|r 152 ----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM-------FADRQIF--IDKKLAAYIVQRMERS---LVFAEKL 215 (246)
Q Consensus 152 ----~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~-------~~~r~i~--l~~~v~~yl~~r~~Rs---~~~l~~~ 215 (246)
T Consensus 698 ~~l~~~F~PEFlnRiDe--ii~F~~L~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~a~~~l~~~gy~~~~GARpl~R~ 775 (823)
T CHL00095 698 EELKQYFRPEFLNRLDE--IIVFRPLTKDEVWEIAEIMLKELFKRLNNQGIQLEVDERFKTLLAKEGYNPLYGARPLRRA 775 (823)
T ss_pred HHHHHHCCHHHHHHCCE--EEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99984379878732782--7861899999999999999999999999689859988899999999587977681368899
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999999999847787889999999867
Q gi|254780567|r 216 VDKMDNLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 216 l~~Ld~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
T Consensus 776 I~~----------~i~~~ls~~il~g~ 792 (823)
T CHL00095 776 IMR----------LLEDPLAEEVLSFK 792 (823)
T ss_pred HHH----------HHHHHHHHHHHCCC
T ss_conf 999----------98899999997488