HHsearch alignment for GI: 254780567 and conserved domain: COG0465
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones].
Probab=98.07 E-value=6.5e-05 Score=50.11 Aligned_cols=202 Identities=17% Similarity=0.224 Sum_probs=112.6
Q ss_pred CCCCCCCEEECCCHHHHHHHHHHHHCCCC----------CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH---
Q ss_conf 66884541653618999999985101678----------84999878777868899999986276201356764445---
Q gi|254780567|r 36 LGISRDDLLVHSAIEQAVRLIDSWPSWPS----------RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--- 102 (246)
Q Consensus 36 ~~~~~dnFiv~~~N~~A~~~i~~~~~~~~----------~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~--- 102 (246)
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV 224 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 224 (596)
T ss_pred CCCCHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCEECCCHHHHHHHC
T ss_conf 67675664186799999999999863855667523534565268559998727899998454689835303444644314
Q ss_pred ---------HHHHH----HHHHHHHHHHCCCCC------------CHHHHHH---HHHHHCCCCCEEEEECCCCCCHHHH
Q ss_conf ---------46666----665334332100376------------1033545---5543112342156403543200223
Q gi|254780567|r 103 ---------ILIDT----RKPVLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVC 154 (246)
Q Consensus 103 ---------~~~~~----~~~i~iddi~~~~~~------------ee~lf~l---~n~~~~~~~~iilts~~~p~~~~~~ 154 (246)
T Consensus 225 GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~A 304 (596)
T COG0465 225 GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPA 304 (596)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH
T ss_conf 78838889999985515996698763433145457788998069999998888520157888754885267874333176
Q ss_pred HHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHH-HHCCCCCH
Q ss_conf 4566788521222450788978999999998666289798899999994066-798999999999999999-84778788
Q gi|254780567|r 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDKMDNLAL-SRGMGITR 232 (246)
Q Consensus 155 l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~-Rs~~~l~~~l~~Ld~~sl-~~kr~ITi 232 (246)
T Consensus 305 LlRp-gRF--DRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V~l~~-iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~ 380 (596)
T COG0465 305 LLRP-GRF--DRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK-IARGTPGFSGADLANLLNEAALLAARRNKKEITM 380 (596)
T ss_pred HCCC-CCC--CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEEC
T ss_conf 5288-776--62554478515657888788641577776678889-8643778563067655668899998836846753
Q ss_pred HHHHHHHHH
Q ss_conf 999999986
Q gi|254780567|r 233 SLAAEVLKE 241 (246)
Q Consensus 233 ~lvk~vL~~ 241 (246)
T Consensus 381 ~~i~ea~dr 389 (596)
T COG0465 381 RDIEEAIDR 389 (596)
T ss_pred CCHHHHHHH
T ss_conf 453889999