HHsearch alignment for GI: 254780567 and conserved domain: COG0470
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=98.33 E-value=1.5e-05 Score=53.96 Aligned_cols=153 Identities=14% Similarity=0.083 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHC-CC-CC-EEEEECCCCCCHHHHHHHHHHHHCCCCH--------------------------HHHHHH
Q ss_conf 8999999985101-67-88-4999878777868899999986276201--------------------------356764
Q gi|254780567|r 49 IEQAVRLIDSWPS-WP-SR-VVILVGPSGSGKSCLANIWSDKSRSTRF--------------------------SNIAKS 99 (246)
Q Consensus 49 N~~A~~~i~~~~~-~~-~~-~l~i~G~~GsGKTHLl~a~~~~~~~~~~--------------------------~~~~~~ 99 (246)
T Consensus 6 ~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~ 85 (325)
T COG0470 6 WQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLR 85 (325)
T ss_pred CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCC
T ss_conf 23589999999986588876100379999978999999999965866433455200224443202568865997732133
Q ss_pred HH---HH-------------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 44---54-------------666666533433210037610335455543112342156403543200223456678852
Q gi|254780567|r 100 LD---SI-------------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 (246)
Q Consensus 100 ~~---~~-------------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~ 163 (246)
T Consensus 86 ~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n-~~~~---il~tI~SRc~ 161 (325)
T COG0470 86 KIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN-DPSK---ILPTIRSRCQ 161 (325)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEC-CHHH---CHHHHHHHEE
T ss_conf 33006999999998604465667726999732032698888767543324888716999749-8555---6478775607
Q ss_pred HCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 12224507889789999999986662897988999999940667989999999999
Q gi|254780567|r 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 (246)
Q Consensus 164 ~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~L 219 (246)
T Consensus 162 ---~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~ 203 (325)
T COG0470 162 ---RIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQAL 203 (325)
T ss_pred ---EEECCCCCHHHHHHHHH-----------HHHHHHHHHHHCCHHHHHCCHHHHH
T ss_conf ---88767741889999850-----------7579999987040688734899999