HHsearch alignment for GI: 254780567 and conserved domain: COG0470

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=98.33  E-value=1.5e-05  Score=53.96  Aligned_cols=153  Identities=14%  Similarity=0.083  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHC-CC-CC-EEEEECCCCCCHHHHHHHHHHHHCCCCH--------------------------HHHHHH
Q ss_conf             8999999985101-67-88-4999878777868899999986276201--------------------------356764
Q gi|254780567|r   49 IEQAVRLIDSWPS-WP-SR-VVILVGPSGSGKSCLANIWSDKSRSTRF--------------------------SNIAKS   99 (246)
Q Consensus        49 N~~A~~~i~~~~~-~~-~~-~l~i~G~~GsGKTHLl~a~~~~~~~~~~--------------------------~~~~~~   99 (246)
T Consensus         6 ~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~   85 (325)
T COG0470           6 WQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLR   85 (325)
T ss_pred             CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCC
T ss_conf             23589999999986588876100379999978999999999965866433455200224443202568865997732133


Q ss_pred             HH---HH-------------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             44---54-------------666666533433210037610335455543112342156403543200223456678852
Q gi|254780567|r  100 LD---SI-------------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK  163 (246)
Q Consensus       100 ~~---~~-------------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~  163 (246)
T Consensus        86 ~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n-~~~~---il~tI~SRc~  161 (325)
T COG0470          86 KIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN-DPSK---ILPTIRSRCQ  161 (325)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEC-CHHH---CHHHHHHHEE
T ss_conf             33006999999998604465667726999732032698888767543324888716999749-8555---6478775607


Q ss_pred             HCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             12224507889789999999986662897988999999940667989999999999
Q gi|254780567|r  164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM  219 (246)
Q Consensus       164 ~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~L  219 (246)
T Consensus       162 ---~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~  203 (325)
T COG0470         162 ---RIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQAL  203 (325)
T ss_pred             ---EEECCCCCHHHHHHHHH-----------HHHHHHHHHHHCCHHHHHCCHHHHH
T ss_conf             ---88767741889999850-----------7579999987040688734899999