HHsearch alignment for GI: 254780567 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=97.62 E-value=0.00076 Score=43.54 Aligned_cols=195 Identities=14% Similarity=0.137 Sum_probs=104.1
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-C--------CHH
Q ss_conf 1034155888776688454165361899999998510167884999878777868899999986276-2--------013
Q gi|254780567|r 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-T--------RFS 94 (246)
Q Consensus 24 ~~~Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-~--------~~~ 94 (246)
T Consensus 152 ~L~~~~~dlt~~Ar~gklDPvIGR-d~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~ 230 (786)
T COG0542 152 ALEKYTRDLTELAREGKLDPVIGR-DEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY 230 (786)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEE
T ss_conf 699874114799865898877374-7999999999835688998476689888999998999997469999787588799
Q ss_pred HHHH---------------HH----HHHHHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 5676---------------44----45466666653343321003761------03354555431123421564035432
Q gi|254780567|r 95 NIAK---------------SL----DSILIDTRKPVLLEDIDLLDFND------TQLFHIINSIHQYDSSLLMTARTFPV 149 (246)
Q Consensus 95 ~~~~---------------~~----~~~~~~~~~~i~iddi~~~~~~e------e~lf~l~n~~~~~~~~iilts~~~p~ 149 (246)
T Consensus 231 sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLARGeL~~IGAT-T~~ 309 (786)
T COG0542 231 SLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGAT-TLD 309 (786)
T ss_pred EECHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEC-CHH
T ss_conf 7148767464653573899999999998517984999823554057776666651256646778745873799735-589
Q ss_pred CH-HHHHHH--HHHHHHHCCEEEECCCCHHHHHHHHHHH----HHHCCCCCCHHHHHHHHHCCCCCHH---HHHHHHHHH
Q ss_conf 00-223456--6788521222450788978999999998----6662897988999999940667989---999999999
Q gi|254780567|r 150 SW-GVCLPD--LCSRLKAATVVKISLPDDDFLEKVIVKM----FADRQIFIDKKLAAYIVQRMERSLV---FAEKLVDKM 219 (246)
Q Consensus 150 ~~-~~~l~D--L~SRl~~g~~~~I~~pdde~~~~il~k~----~~~r~i~l~~~v~~yl~~r~~Rs~~---~l~~~l~~L 219 (246)
T Consensus 310 EYRk~iEKD~AL~RRFQ---~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLi 386 (786)
T COG0542 310 EYRKYIEKDAALERRFQ---KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLL 386 (786)
T ss_pred HHHHHHHHCHHHHHCCC---EEECCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99887330667784675---102799898999999987788887706964337999999999986455678994677788
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780567|r 220 DNLA 223 (246)
Q Consensus 220 d~~s 223 (246)
T Consensus 387 DeA~ 390 (786)
T COG0542 387 DEAG 390 (786)
T ss_pred HHHH
T ss_conf 9999