HHsearch alignment for GI: 254780567 and conserved domain: COG1224
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription].
Probab=98.49 E-value=1.4e-05 Score=54.18 Aligned_cols=112 Identities=14% Similarity=0.149 Sum_probs=78.7
Q ss_pred HHHHHHHHHHCCCC-C-EEEEECCCCCCH--------HHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 33545554311234-2-156403543200--------2234566788521222450788978999999998666289798
Q gi|254780567|r 125 QLFHIINSIHQYDS-S-LLMTARTFPVSW--------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 (246)
Q Consensus 125 ~lf~l~n~~~~~~~-~-iilts~~~p~~~--------~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~ 194 (246)
T Consensus 306 E~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl---lII~t~py~~~EireIi~iRa~ee~i~l~ 382 (450)
T COG1224 306 ECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRL---LIISTRPYSREEIREIIRIRAKEEDIELS 382 (450)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCCCCCHHHHHHE---EEEECCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 899999987631467579997177500121667768888987666225---67744779889999999976435403048
Q ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHH
Q ss_conf 899999994066-79899999999999999984-7787889999999
Q gi|254780567|r 195 KKLAAYIVQRME-RSLVFAEKLVDKMDNLALSR-GMGITRSLAAEVL 239 (246)
Q Consensus 195 ~~v~~yl~~r~~-Rs~~~l~~~l~~Ld~~sl~~-kr~ITi~lvk~vL 239 (246)
T Consensus 383 ~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~ 429 (450)
T COG1224 383 DDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAK 429 (450)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHCCCEEEHHHHHHHH
T ss_conf 88999997515034489999861688899987179746566799999