HHsearch alignment for GI: 254780567 and conserved domain: COG1484
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair].
Probab=99.09 E-value=2e-10 Score=84.10 Aligned_cols=131 Identities=17% Similarity=0.234 Sum_probs=84.9
Q ss_pred CCCCCCCCEEECCC-HHHHHHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHHHHHCCCCH-----HHHH------HHH
Q ss_conf 76688454165361-89999999851016--7884999878777868899999986276201-----3567------644
Q gi|254780567|r 35 CLGISRDDLLVHSA-IEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRF-----SNIA------KSL 100 (246)
Q Consensus 35 ~~~~~~dnFiv~~~-N~~A~~~i~~~~~~--~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~-----~~~~------~~~ 100 (246)
T Consensus 73 ~k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 73 KKTFEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH
T ss_conf 57854302358855669999999999987325882899899998799999999999998398499988599999999987
Q ss_pred -------H-HHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH------HHHHHHH
Q ss_conf -------4-5466666653343321003761---033545554311234215640354320022345------6678852
Q gi|254780567|r 101 -------D-SILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP------DLCSRLK 163 (246)
Q Consensus 101 -------~-~~~~~~~~~i~iddi~~~~~~e---e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~------DL~SRl~ 163 (246)
T Consensus 153 ~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN~~~~~~~~~~~~~~~~e~~~dRi~ 231 (254)
T COG1484 153 DEGRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSNLSFGEWDELFGDDALTEALLDRIL 231 (254)
T ss_pred HCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEECCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 45526899998875289899823677668815587999999999973054-20205882788866067511689999998
Q ss_pred HCC
Q ss_conf 122
Q gi|254780567|r 164 AAT 166 (246)
Q Consensus 164 ~g~ 166 (246)
T Consensus 232 ~~~ 234 (254)
T COG1484 232 HHS 234 (254)
T ss_pred HCC
T ss_conf 616