HHsearch alignment for GI: 254780567 and conserved domain: COG1484

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair].
Probab=99.09  E-value=2e-10  Score=84.10  Aligned_cols=131  Identities=17%  Similarity=0.234  Sum_probs=84.9

Q ss_pred             CCCCCCCCEEECCC-HHHHHHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHHHHHCCCCH-----HHHH------HHH
Q ss_conf             76688454165361-89999999851016--7884999878777868899999986276201-----3567------644
Q gi|254780567|r   35 CLGISRDDLLVHSA-IEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRF-----SNIA------KSL  100 (246)
Q Consensus        35 ~~~~~~dnFiv~~~-N~~A~~~i~~~~~~--~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~-----~~~~------~~~  100 (246)
T Consensus        73 ~k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~  152 (254)
T COG1484          73 KKTFEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAF  152 (254)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH
T ss_conf             57854302358855669999999999987325882899899998799999999999998398499988599999999987


Q ss_pred             -------H-HHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH------HHHHHHH
Q ss_conf             -------4-5466666653343321003761---033545554311234215640354320022345------6678852
Q gi|254780567|r  101 -------D-SILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP------DLCSRLK  163 (246)
Q Consensus       101 -------~-~~~~~~~~~i~iddi~~~~~~e---e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~------DL~SRl~  163 (246)
T Consensus       153 ~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN~~~~~~~~~~~~~~~~e~~~dRi~  231 (254)
T COG1484         153 DEGRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSNLSFGEWDELFGDDALTEALLDRIL  231 (254)
T ss_pred             HCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEECCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             45526899998875289899823677668815587999999999973054-20205882788866067511689999998


Q ss_pred             HCC
Q ss_conf             122
Q gi|254780567|r  164 AAT  166 (246)
Q Consensus       164 ~g~  166 (246)
T Consensus       232 ~~~  234 (254)
T COG1484         232 HHS  234 (254)
T ss_pred             HCC
T ss_conf             616