HHsearch alignment for GI: 254780567 and conserved domain: COG2255
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair].
Probab=99.48 E-value=5.6e-12 Score=93.59 Aligned_cols=210 Identities=18% Similarity=0.198 Sum_probs=142.7
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCHH-H----HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHH---
Q ss_conf 3415588877668845416536189-9----9999985101678849998787778688999999862762013567---
Q gi|254780567|r 26 EQLFFSFPRCLGISRDDLLVHSAIE-Q----AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA--- 97 (246)
Q Consensus 26 ~Ql~l~~~~~~~~~~dnFiv~~~N~-~----A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~--- 97 (246)
T Consensus 12 ~~~~~e~~lRP~-~l~efi-GQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l 88 (332)
T COG2255 12 EEMKIERSLRPK-TLDEFI-GQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL 88 (332)
T ss_pred HHHHHHHCCCCC-CHHHHC-CHHHHHHHHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCC
T ss_conf 044443035865-488851-839999999999999984-49876747864799876888999999985677376366201
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHCC----------------CCCEEEEECCCCCCHHHHH
Q ss_conf -----6444546666665334332100376103-35455543112----------------3421564035432002234
Q gi|254780567|r 98 -----KSLDSILIDTRKPVLLEDIDLLDFNDTQ-LFHIINSIHQY----------------DSSLLMTARTFPVSWGVCL 155 (246)
Q Consensus 98 -----~~~~~~~~~~~~~i~iddi~~~~~~ee~-lf~l~n~~~~~----------------~~~iilts~~~p~~~~~~l 155 (246)
T Consensus 89 eK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~l---t 165 (332)
T COG2255 89 EKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGML---T 165 (332)
T ss_pred CCHHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEEEEEECCCCCCC---C
T ss_conf 5726599998639867767772553147428989646753105778972487553476379981375101346645---6
Q ss_pred HHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CCCCHHH
Q ss_conf 566788521222450788978999999998666289798899999994066798999999999999999847-7878899
Q gi|254780567|r 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSL 234 (246)
Q Consensus 156 ~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~k-r~ITi~l 234 (246)
T Consensus 166 ~PLrdRF--Gi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~~~~~I~~~i 243 (332)
T COG2255 166 NPLRDRF--GIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDGDIDRDI 243 (332)
T ss_pred CHHHHHC--CCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 3368862--86045405888999999998888738776857999999863699389999999999999981688204899
Q ss_pred HHHHHHHHH
Q ss_conf 999998674
Q gi|254780567|r 235 AAEVLKETQ 243 (246)
Q Consensus 235 vk~vL~~~~ 243 (246)
T Consensus 244 a~~aL~~L~ 252 (332)
T COG2255 244 ADKALKMLD 252 (332)
T ss_pred HHHHHHHHC
T ss_conf 999998729