HHsearch alignment for GI: 254780567 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=99.66 E-value=3.2e-15 Score=113.53 Aligned_cols=205 Identities=18% Similarity=0.184 Sum_probs=137.7
Q ss_pred CCCCCCCCCCCCCCEEECCCHHHHH-HHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH-----H
Q ss_conf 5588877668845416536189999-9998510-1678849998787778688999999862762013567644-----4
Q gi|254780567|r 29 FFSFPRCLGISRDDLLVHSAIEQAV-RLIDSWP-SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL-----D 101 (246)
Q Consensus 29 ~l~~~~~~~~~~dnFiv~~~N~~A~-~~i~~~~-~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~-----~ 101 (246)
T Consensus 13 PLA~rmRP~-~lde~v-GQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr 90 (436)
T COG2256 13 PLAERLRPK-SLDEVV-GQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLR 90 (436)
T ss_pred CHHHHHCCC-CHHHHC-CHHHHHCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
T ss_conf 767770977-787855-718661899438999964998605777899988889999998761776699515234679999
Q ss_pred HHHHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 54666--------6665334332100376103354555431123421564035432002234566788521222450788
Q gi|254780567|r 102 SILID--------TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 (246)
Q Consensus 102 ~~~~~--------~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~p 173 (246)
T Consensus 91 ~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~l-n~ALlSR~~---vf~lk~L 163 (436)
T COG2256 91 EIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFEL-NPALLSRAR---VFELKPL 163 (436)
T ss_pred HHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHH---HCCCEEEEEECCCCCCCEEE-CHHHHHHHH---EEEEECC
T ss_conf 9999999987258834998722533374456551033---24886899962678987140-388861104---1565169
Q ss_pred CHHHHHHHHHHHH--HHCCCC-----CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9789999999986--662897-----988999999940667989999999999999998477878899999998674
Q gi|254780567|r 174 DDDFLEKVIVKMF--ADRQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 (246)
Q Consensus 174 dde~~~~il~k~~--~~r~i~-----l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~~ 243 (246)
T Consensus 164 ~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~-~~~~~~~~~l~~~l~~~~ 239 (436)
T COG2256 164 SSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAE-PDEVLILELLEEILQRRS 239 (436)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHH
T ss_conf 9899999999998654137776556688899999998628619999889999998627-775247999999986552