HHsearch alignment for GI: 254780567 and conserved domain: PRK00080
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=99.68 E-value=5.6e-15 Score=112.08 Aligned_cols=206 Identities=19% Similarity=0.177 Sum_probs=145.9
Q ss_pred CCCCCCCCCCCCCEEECCCHHH-----HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHH-----
Q ss_conf 5888776688454165361899-----999998510167884999878777868899999986276201356764-----
Q gi|254780567|r 30 FSFPRCLGISRDDLLVHSAIEQ-----AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----- 99 (246)
Q Consensus 30 l~~~~~~~~~~dnFiv~~~N~~-----A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~----- 99 (246)
T Consensus 15 ~~~~lRP~-~l~efi-GQ~~i~~~L~v~i~Aak~-r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~lek~~ 91 (328)
T PRK00080 15 FERSLRPK-SLDEFI-GQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKAG 91 (328)
T ss_pred CCCCCCCC-CHHHCC-CHHHHHHHHHHHHHHHHH-CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCHH
T ss_conf 00055988-576635-959999999999999996-499988057658899889999999999868881562450016747
Q ss_pred ---HHHHHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHC----------------CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf ---445466666653343321003761033-545554311----------------234215640354320022345667
Q gi|254780567|r 100 ---LDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQ----------------YDSSLLMTARTFPVSWGVCLPDLC 159 (246)
Q Consensus 100 ---~~~~~~~~~~~i~iddi~~~~~~ee~l-f~l~n~~~~----------------~~~~iilts~~~p~~~~~~l~DL~ 159 (246)
T Consensus 92 DL~~iLt~l~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pFTLIGATTr~g~L---s~PLr 168 (328)
T PRK00080 92 DLAALLTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLL---TSPLR 168 (328)
T ss_pred HHHHHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCEEEEECCCCCCCC---CHHHH
T ss_conf 899999608878767650653248889988579877523457864786532455589983474013676657---76789
Q ss_pred HHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHH
Q ss_conf 885212224507889789999999986662897988999999940667989999999999999998-4778788999999
Q gi|254780567|r 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS-RGMGITRSLAAEV 238 (246)
Q Consensus 160 SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~-~kr~ITi~lvk~v 238 (246)
T Consensus 169 dRF--Gi~~~l~~Y~~eeL~~Ii~rsa~~l~i~i~~~~~~eIA~rSRGTPRiAnrLLrRvrDfa~v~~~~~I~~~~~~~a 246 (328)
T PRK00080 169 DRF--GIVQRLEFYTVEELEKIVKRSARILGIEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGIITREIADKA 246 (328)
T ss_pred HHC--CCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 757--933663458999999999999998398878999999998638983999999999999999837996599999999
Q ss_pred HHHHH
Q ss_conf 98674
Q gi|254780567|r 239 LKETQ 243 (246)
Q Consensus 239 L~~~~ 243 (246)
T Consensus 247 L~~l~ 251 (328)
T PRK00080 247 LDMLG 251 (328)
T ss_pred HHHCC
T ss_conf 99569