HHsearch alignment for GI: 254780567 and conserved domain: PRK04132
>PRK04132 replication factor C small subunit; Provisional.
Probab=96.55 E-value=0.056 Score=32.07 Aligned_cols=102 Identities=11% Similarity=0.002 Sum_probs=76.9
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
Q ss_conf 54555431123421564035432002234566788521222450788978999999998666289798899999994066
Q gi|254780567|r 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 (246)
Q Consensus 127 f~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~ 206 (246)
T Consensus 665 ~~r~~~~~~~~~~~~~SCNYsSK----IIePIQSRCa---vFRF~PL~~e~v~~RL~~Ia~~Egv~itedGleAI~~~ae 737 (863)
T PRK04132 665 TCHNDHSFIANGFVSHNCNYSSK----IIEPIQSRCA---IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYVAE 737 (863)
T ss_pred HHHHHHHHHCCCEEEEECCCCCC----CCCHHHCCEE---EEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf 98778764205617986676040----7416655624---7883689999999999999997499767789999999756
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 798999999999999999847787889999999
Q gi|254780567|r 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 (246)
Q Consensus 207 Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL 239 (246)
T Consensus 738 GDMRkAIN~LQ---saa~~-~~~Vt~d~Vy~v~ 766 (863)
T PRK04132 738 GDMRRAINVLQ---AAAAL-DTKITDENVFKVA 766 (863)
T ss_pred CCHHHHHHHHH---HHHHC-CCCCCHHHHHHHC
T ss_conf 74899999999---99861-6987888999970