HHsearch alignment for GI: 254780567 and conserved domain: PRK04132

>PRK04132 replication factor C small subunit; Provisional.
Probab=96.55  E-value=0.056  Score=32.07  Aligned_cols=102  Identities=11%  Similarity=0.002  Sum_probs=76.9

Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
Q ss_conf             54555431123421564035432002234566788521222450788978999999998666289798899999994066
Q gi|254780567|r  127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME  206 (246)
Q Consensus       127 f~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~  206 (246)
T Consensus       665 ~~r~~~~~~~~~~~~~SCNYsSK----IIePIQSRCa---vFRF~PL~~e~v~~RL~~Ia~~Egv~itedGleAI~~~ae  737 (863)
T PRK04132        665 TCHNDHSFIANGFVSHNCNYSSK----IIEPIQSRCA---IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYVAE  737 (863)
T ss_pred             HHHHHHHHHCCCEEEEECCCCCC----CCCHHHCCEE---EEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf             98778764205617986676040----7416655624---7883689999999999999997499767789999999756


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             798999999999999999847787889999999
Q gi|254780567|r  207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL  239 (246)
Q Consensus       207 Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL  239 (246)
T Consensus       738 GDMRkAIN~LQ---saa~~-~~~Vt~d~Vy~v~  766 (863)
T PRK04132        738 GDMRRAINVLQ---AAAAL-DTKITDENVFKVA  766 (863)
T ss_pred             CCHHHHHHHHH---HHHHC-CCCCCHHHHHHHC
T ss_conf             74899999999---99861-6987888999970