HHsearch alignment for GI: 254780567 and conserved domain: PRK04841
>PRK04841 transcriptional regulator MalT; Provisional.
Probab=97.59 E-value=0.00047 Score=44.84 Aligned_cols=145 Identities=17% Similarity=0.284 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHH--------------HHH----------------------H----
Q ss_conf 788499987877786889999998627620135676--------------444----------------------5----
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK--------------SLD----------------------S---- 102 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~--------------~~~----------------------~---- 102 (246)
T Consensus 31 ~~~l~lv~APaG~GKTtl~a~w~~~~~~~~Wlsld~~d~~~~~f~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 31 NYRLVLVRSPAGYGKTTLASQWAAGKNNVGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAEKRQYASLTSLFA 110 (903)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHH
T ss_conf 89979997799988999999998349985998588544899999999999999856543311231135566554999999
Q ss_pred HHH------HHHHHHHHHHHHCCCCCC--HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 466------666653343321003761--033545554311234215640354320022345667885212224507889
Q gi|254780567|r 103 ILI------DTRKPVLLEDIDLLDFND--TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 (246)
Q Consensus 103 ~~~------~~~~~i~iddi~~~~~~e--e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pd 174 (246)
T Consensus 111 ~l~~~l~~~~~~~~lvlDD~h~i~~~~~~~~l~~Ll~~-~p~~l~lvl~sR~~p~l---~l~~l~---~~~~l~~i~~~d 183 (903)
T PRK04841 111 QLFIELSDWHQPLYLVLDDYHLITNPEIHEAMRFFLRH-QPENLTLVVLSRNLPPL---GIANLR---VRDQLLEIGSQQ 183 (903)
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH-CCCCEEEEEEECCCCCC---CHHHHH---HCCEEEEECHHH
T ss_conf 99999755899869998683648886899999999983-89883899876899987---524577---459569986887
Q ss_pred HHHHHHHHHHHHHH-CCCCCCHHHHHHHHHCCCCCHHHHHH
Q ss_conf 78999999998666-28979889999999406679899999
Q gi|254780567|r 175 DDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEK 214 (246)
Q Consensus 175 de~~~~il~k~~~~-r~i~l~~~v~~yl~~r~~Rs~~~l~~ 214 (246)
T Consensus 184 L~Ft~~E~~~~~~~~~g~~l~~~~~~~l~~~TeGW~a~l~L 224 (903)
T PRK04841 184 LAFDHQEAQQFFDQRLSSPIEAAESSRLCDRVEGWPTALQL 224 (903)
T ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHH
T ss_conf 59999999999986259999999999999970878999999