HHsearch alignment for GI: 254780567 and conserved domain: PRK05342
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional.
Probab=98.04 E-value=9.4e-05 Score=49.14 Aligned_cols=191 Identities=16% Similarity=0.216 Sum_probs=104.4
Q ss_pred CCCCCCCCCCCCCEEECCCHHH---HHHHHHHHH------CC------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 5888776688454165361899---999998510------16------78849998787778688999999862762013
Q gi|254780567|r 30 FSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWP------SW------PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 (246)
Q Consensus 30 l~~~~~~~~~~dnFiv~~~N~~---A~~~i~~~~------~~------~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~ 94 (246)
T Consensus 60 lp~P~eI~~~LD~yVIGQ~~AKk~lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l~vPF~i 139 (411)
T PRK05342 60 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARILNVPFAI 139 (411)
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 99979999986214028488889999999999999860213356652134538998999977889999999986999899
Q ss_pred HHH-------------HHH---------HHHHHHHHHHHHHHHHHCCCC---------------CCHHHHHHHHHHHCC-
Q ss_conf 567-------------644---------454666666533433210037---------------610335455543112-
Q gi|254780567|r 95 NIA-------------KSL---------DSILIDTRKPVLLEDIDLLDF---------------NDTQLFHIINSIHQY- 136 (246)
Q Consensus 95 ~~~-------------~~~---------~~~~~~~~~~i~iddi~~~~~---------------~ee~lf~l~n~~~~~- 136 (246)
T Consensus 140 aDAT~lTEaGYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLkiiEGt~v~v 219 (411)
T PRK05342 140 ADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASV 219 (411)
T ss_pred EEECEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEECC
T ss_conf 86120012674560799999999998288899883682888502345424788888777651248999999875871411
Q ss_pred -----------------CCCEEEEECCCCC---------------------------------------CHH--HHHHHH
Q ss_conf -----------------3421564035432---------------------------------------002--234566
Q gi|254780567|r 137 -----------------DSSLLMTARTFPV---------------------------------------SWG--VCLPDL 158 (246)
Q Consensus 137 -----------------~~~iilts~~~p~---------------------------------------~~~--~~l~DL 158 (246)
T Consensus 220 p~~ggrkhp~~~~~~idT~nILFI~gGAF~GL~~II~~R~~~~~iGF~~~~~~~~~~~~~~~l~~v~p~DLi~fGlIPEf 299 (411)
T PRK05342 220 PPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKSGIGFGAEVKSKDEKDLGELLAQVEPEDLVKFGLIPEF 299 (411)
T ss_pred CCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCHHH
T ss_conf 88877778776516761471799911553358999986357887677887664110005678762798788873883776
Q ss_pred HHHHHHCCEEEECCCCHHHHHHHHH-----------HHHHHCCCC--CCHHHHHHHHHCCC---CCHHHHHHHHHHHHHH
Q ss_conf 7885212224507889789999999-----------986662897--98899999994066---7989999999999999
Q gi|254780567|r 159 CSRLKAATVVKISLPDDDFLEKVIV-----------KMFADRQIF--IDKKLAAYIVQRME---RSLVFAEKLVDKMDNL 222 (246)
Q Consensus 159 ~SRl~~g~~~~I~~pdde~~~~il~-----------k~~~~r~i~--l~~~v~~yl~~r~~---Rs~~~l~~~l~~Ld~~ 222 (246)
T Consensus 300 iGRlP--Viv~L~~L~~~~L~~ILtePkNaLikQY~~LF~~dgV~L~Ft~~AL~~IA~~A~~~~tGARgLRsIlE~iLld 377 (411)
T PRK05342 300 IGRLP--VVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDDALEAIAKKAIERKTGARGLRSILEEVLLD 377 (411)
T ss_pred HCCCC--EEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 14664--0546244799999999658741599999999975496799868999999999998475745779999999788