HHsearch alignment for GI: 254780567 and conserved domain: PRK05563
>PRK05563 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.41 E-value=2.8e-11 Score=89.30 Aligned_cols=188 Identities=14% Similarity=0.166 Sum_probs=126.4
Q ss_pred CCCCEEECCCHHHHHHHHHHHHCC-CC-CEEEEECCCCCCHHHHHHHHHHHHCCCCHH----------HHH---------
Q ss_conf 845416536189999999851016-78-849998787778688999999862762013----------567---------
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDSWPSW-PS-RVVILVGPSGSGKSCLANIWSDKSRSTRFS----------NIA--------- 97 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~~~~~-~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~----------~~~--------- 97 (246)
T Consensus 14 ~f~dvv-gQ--~~v~~~L~n~i~~~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i~~g~~~Dv 90 (541)
T PRK05563 14 TFEDVV-GQ--EHITTTLKNQIINNRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKINEGLLMDV 90 (541)
T ss_pred CHHHHC-CC--HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 776624-84--999999999998499320453038799589999999999957999888985751488999856898873
Q ss_pred ------HHH--HH-----------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHH
Q ss_conf ------644--45-----------4666666533433210037610335455543112-342156403543200223456
Q gi|254780567|r 98 ------KSL--DS-----------ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPD 157 (246)
Q Consensus 98 ------~~~--~~-----------~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~-~~~iilts~~~p~~~~~~l~D 157 (246)
T Consensus 91 ~Eidaas~~gvd~iR~~~~~~~~~p~~~~~Kv~IiDEvhmls--~~a~nallKtlEePp~~~~Filatte~~ki---~~t 165 (541)
T PRK05563 91 IEIDAASNNGVDDIREIIENVKYPPQEGKYKVYIMDEVHMLS--QGAVNAFLKTLEEPPSNVIFILATTDPQKL---PIT 165 (541)
T ss_pred EEECCCCCCCHHHHHHHHHHCEECCCCCCEEEEEEECCCCCC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCC---CHH
T ss_conf 662444447889999999761048767870599997723389--999999999985487775699976984427---455
Q ss_pred HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 67885212224507889789999999986662897988999999940667989999999999999998477878899999
Q gi|254780567|r 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 (246)
Q Consensus 158 L~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~ 237 (246)
T Consensus 166 I~SRcq---~f~f~~i~~~~i~~~L~~I~~~E~i~~~~~al~lIa~~s~GsmRDAlslLdQ~i--s~-~~~~it~~~v~~ 239 (541)
T PRK05563 166 ILSRCQ---RFDFKRIKVKDIFKRLRKIVEEQGIFADDKSLNLIARMSDGAMRDALSILDQAI--SM-GDGKVDYDDVVS 239 (541)
T ss_pred HHHHEE---EEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH--HH-CCCCCCHHHHHH
T ss_conf 674213---577543899999999999999849998789999999745997788999999999--83-599866999999
Q ss_pred HHH
Q ss_conf 998
Q gi|254780567|r 238 VLK 240 (246)
Q Consensus 238 vL~ 240 (246)
T Consensus 240 ~lG 242 (541)
T PRK05563 240 MLG 242 (541)
T ss_pred HHC
T ss_conf 968