HHsearch alignment for GI: 254780567 and conserved domain: PRK05564
>PRK05564 DNA polymerase III subunit delta'; Validated.
Probab=98.43 E-value=1.6e-06 Score=59.95 Aligned_cols=164 Identities=18% Similarity=0.149 Sum_probs=91.9
Q ss_pred CCCCCEEECCCHHHHHHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHHHHHCCC-----CHHHHH---HHHHH-----
Q ss_conf 8845416536189999999851016--78849998787778688999999862762-----013567---64445-----
Q gi|254780567|r 38 ISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIA---KSLDS----- 102 (246)
Q Consensus 38 ~~~dnFiv~~~N~~A~~~i~~~~~~--~~~~l~i~G~~GsGKTHLl~a~~~~~~~~-----~~~~~~---~~~~~----- 102 (246)
T Consensus 1 M~f~~ii---Gq~~i~~~L~~~i~~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~~~~~I~vd~ 77 (313)
T PRK05564 1 MSFRTII---GHENIKNRIDNSIIKGKFSHASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPINKKSIGVDD 77 (313)
T ss_pred CCHHHCC---CHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHH
T ss_conf 9832326---8299999999999879987504327999850999999999998289977889865886332256999899
Q ss_pred -----------HHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCEEE
Q ss_conf -----------46666665334332100376-1033545554311234-2156403543200223456678852122245
Q gi|254780567|r 103 -----------ILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 (246)
Q Consensus 103 -----------~~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~-~iilts~~~p~~~~~~l~DL~SRl~~g~~~~ 169 (246)
T Consensus 78 IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtL---EEPP~~t~fIL~t~~~~~---lLpTI~SRCQ---~~~ 148 (313)
T PRK05564 78 IRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTI---EEPPKGVFIILLCENLEQ---ILDTIKSRCQ---IYK 148 (313)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCC---CCCCCCEEEEEEECCHHH---CCCHHHCCCE---EEE
T ss_conf 9999999840862589569998077775899999984550---368998589986498354---7577870653---566
Q ss_pred ECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 078897899999999866628979889999999406679899999999
Q gi|254780567|r 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 (246)
Q Consensus 170 I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~ 217 (246)
T Consensus 149 f~~l~~~~i~~~L~~~~----~~~~~~~~~~~~~~s~G~~~~a~~~~~ 192 (313)
T PRK05564 149 LNRLSKEDIEKFISYKY----NDIDEENKNSAIAFSDGIPGKVEKFIE 192 (313)
T ss_pred CCCCCHHHHHHHHHHHC----CCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 89989999999999862----589999999999982998799999840