HHsearch alignment for GI: 254780567 and conserved domain: PRK06090
>PRK06090 DNA polymerase III subunit delta'; Validated.
Probab=96.93 E-value=0.0056 Score=38.22 Aligned_cols=119 Identities=15% Similarity=0.205 Sum_probs=62.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCH---------HHHH---HHHHH------------H----------------
Q ss_conf 884999878777868899999986276201---------3567---64445------------4----------------
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRF---------SNIA---KSLDS------------I---------------- 103 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~---------~~~~---~~~~~------------~---------------- 103 (246)
T Consensus 25 ~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~pe~~~k~I~vd~IR~l~~~~~~~~ 104 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSHALLCQNYQSEACGFCHSCELMKSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESS 104 (319)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 30676679998579999999999980899999988778779998758999823661233567687999999999975452
Q ss_pred HHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHH
Q ss_conf 6666665334332100376-103354555431123--4215640354320022345667885212224507889789999
Q gi|254780567|r 104 LIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYD--SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 (246)
Q Consensus 104 ~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~--~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~ 180 (246)
T Consensus 105 ~~g~~KV~iI~~ae~m~~~AaNALLKtL---EEPp~~t~fiL~t~-~~~~---ll~TI~SRCq---~~~l~~p~~~~~~~ 174 (319)
T PRK06090 105 QLGGYRLFVIEPADAMNESASNALLKTL---EEPAPNCLFLLVTH-NQKR---LLPTIVSRCQ---QWVVTPPSTDQAMQ 174 (319)
T ss_pred CCCCCEEEEECCHHHCCHHHHHHHHHHH---CCCCCCEEEEEEEC-CHHH---CCCCHHHCCC---CCCCCCCCHHHHHH
T ss_conf 1069369998144434999999999984---28998838998768-5120---8641876144---50289959999999
Q ss_pred HHHHHHHHCCCCCCHH
Q ss_conf 9999866628979889
Q gi|254780567|r 181 VIVKMFADRQIFIDKK 196 (246)
Q Consensus 181 il~k~~~~r~i~l~~~ 196 (246)
T Consensus 175 WL~~q----~~~~~~~ 186 (319)
T PRK06090 175 WLKGQ----GISVPAY 186 (319)
T ss_pred HHHHH----CCCCHHH
T ss_conf 99884----8755799