HHsearch alignment for GI: 254780567 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=100.00 E-value=0 Score=382.06 Aligned_cols=220 Identities=17% Similarity=0.180 Sum_probs=197.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-----CHHH
Q ss_conf 34810341558887766884541653618999999985101678849998787778688999999862762-----0135
Q gi|254780567|r 21 PKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST-----RFSN 95 (246)
Q Consensus 21 ~~~~~~Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~-----~~~~ 95 (246)
T Consensus 2 ~~n~P~QL~L~~~l~~~~tfdnFi~g~n~~~~~al~~~~~~~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~ 81 (235)
T PRK08084 2 SLNTPAQLSLPLYLPDDETFASFYPGDNDSLLAALQNVLRQEHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPL 81 (235)
T ss_pred CCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEH
T ss_conf 98995520258999997663023448869999999999857898769998999988899999999999707985799877
Q ss_pred HH-HHH---HHHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCE
Q ss_conf 67-644---4546666665334332100376---1033545554311234-21564035432002234566788521222
Q gi|254780567|r 96 IA-KSL---DSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATV 167 (246)
Q Consensus 96 ~~-~~~---~~~~~~~~~~i~iddi~~~~~~---ee~lf~l~n~~~~~~~-~iilts~~~p~~~~~~l~DL~SRl~~g~~ 167 (246)
T Consensus 82 ~~~~~~~~~~l~~l~~~dll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~DL~SRl~~g~~ 161 (235)
T PRK08084 82 DKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQI 161 (235)
T ss_pred HHHHHHHHHHHHHHHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCCCE
T ss_conf 98665179999876418989982745546997899999999999998489669996798824302312889999956972
Q ss_pred EEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 4507889789999999986662897988999999940667989999999999999998477878899999998
Q gi|254780567|r 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 (246)
Q Consensus 168 ~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~ 240 (246)
T Consensus 162 ~~i~~~dde~~~~iL~~~a~~rgl~l~~~V~~yl~~~~~R~~~~L~~~l~~Ld~~Sl~~kr~iTip~vkevL~ 234 (235)
T PRK08084 162 YKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDKASITAQRKLTIPFVKEILK 234 (235)
T ss_pred EEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
T ss_conf 7855999899999999999973999998999999986158899999999999999998199999999999965