HHsearch alignment for GI: 254780567 and conserved domain: PRK10787
>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=98.70 E-value=6.5e-07 Score=62.41 Aligned_cols=173 Identities=18% Similarity=0.236 Sum_probs=105.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH-----------------HHHH-------HHHHHHHHHH
Q ss_conf 167884999878777868899999986276201356764445-----------------4666-------6665334332
Q gi|254780567|r 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS-----------------ILID-------TRKPVLLEDI 116 (246)
Q Consensus 61 ~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~-----------------~~~~-------~~~~i~iddi 116 (246)
T Consensus 346 ~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~DeaeirGHrrTYvgampGrii~~l~~a~~~nPv~llDEi 425 (784)
T PRK10787 346 KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEI 425 (784)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEHHH
T ss_conf 67787799646998772469999999858986998068878888825643343443683899999974898856650035
Q ss_pred HCCCCC-----CHHHH-------------HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHH
Q ss_conf 100376-----10335-------------455543112342156403543200223456678852122245078897899
Q gi|254780567|r 117 DLLDFN-----DTQLF-------------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 (246)
Q Consensus 117 ~~~~~~-----ee~lf-------------~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~ 178 (246)
T Consensus 426 DK~~~~~~Gdp~salLEvLDpeQN~~F~Dhyl~~-~~DlS~v~Fi~TaN~--~~-ip~pLlDRmE---~i~~~gYt~~eK 498 (784)
T PRK10787 426 DKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEV-DYDLSDVMFVATSNS--MN-IPAPLLDRME---VIRLSGYTEDEK 498 (784)
T ss_pred HHHCCCCCCCHHHHHHHHCCHHHCCCCCCCEEEC-CCCHHHEEEEEECCC--CC-CCHHHHHHEE---EEEECCCCHHHH
T ss_conf 5522455899889999845976556400032204-645222589973276--77-8767763121---554116767889
Q ss_pred HHHHHHHHH----------HCCCCCCHHHHHHHHHCCCCC--HHHHHHHHHHHHHHH----HHHC--C--CCCHHHHHHH
Q ss_conf 999999866----------628979889999999406679--899999999999999----9847--7--8788999999
Q gi|254780567|r 179 EKVIVKMFA----------DRQIFIDKKLAAYIVQRMERS--LVFAEKLVDKMDNLA----LSRG--M--GITRSLAAEV 238 (246)
Q Consensus 179 ~~il~k~~~----------~r~i~l~~~v~~yl~~r~~Rs--~~~l~~~l~~Ld~~s----l~~k--r--~ITi~lvk~v 238 (246)
T Consensus 499 ~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytrEaGvR~ler~i~~i~rk~~~~~~~~~~~~~~~i~~~~l~~~ 578 (784)
T PRK10787 499 LNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDY 578 (784)
T ss_pred HHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHH
T ss_conf 99999745399999828996567439999999875336544425168899999999999997078878558889999998
Q ss_pred HH
Q ss_conf 98
Q gi|254780567|r 239 LK 240 (246)
Q Consensus 239 L~ 240 (246)
T Consensus 579 lg 580 (784)
T PRK10787 579 LG 580 (784)
T ss_pred HC
T ss_conf 29