HHsearch alignment for GI: 254780567 and conserved domain: PRK10923
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional.
Probab=98.56 E-value=2.9e-06 Score=58.40 Aligned_cols=186 Identities=15% Similarity=0.193 Sum_probs=112.6
Q ss_pred EECCCHH--HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----CCHHHHHH--HHHHH-----------
Q ss_conf 6536189--9999998510167884999878777868899999986276-----20135676--44454-----------
Q gi|254780567|r 44 LVHSAIE--QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAK--SLDSI----------- 103 (246)
Q Consensus 44 iv~~~N~--~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-----~~~~~~~~--~~~~~----------- 103 (246)
T Consensus 140 liG~S~~m~~v~~~i~~~a~-~~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfi~vnC~~~~~~~~e~eLFG~~~gaf~ 218 (469)
T PRK10923 140 IIGEAPAMQDVFRIIGRLSR-SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT 218 (469)
T ss_pred CEECCHHHHHHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCC
T ss_conf 54689999999999999858-89978998989826999999999748877999578767889977899997087667878
Q ss_pred ----------HHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH----------CCCCCEEEEECCCCCCH---HHHHHHHH
Q ss_conf ----------6666665334332100376-103354555431----------12342156403543200---22345667
Q gi|254780567|r 104 ----------LIDTRKPVLLEDIDLLDFN-DTQLFHIINSIH----------QYDSSLLMTARTFPVSW---GVCLPDLC 159 (246)
Q Consensus 104 ----------~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~----------~~~~~iilts~~~p~~~---~~~l~DL~ 159 (246)
T Consensus 219 ga~~~~~g~~e~a~~GTLfLdeI~~L~~~~Q~kLl~~L~~~~~~~~g~~~~~~~d~RiIaat~~~L~~~v~~g~Fr~dLy 298 (469)
T PRK10923 219 GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 (469)
T ss_pred CCCCCCCCCHHHCCCCCEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECCCCHHHHHHHCCHHHHHH
T ss_conf 86424587366438992656636648999999999998559378579985122143799707879999866081779999
Q ss_pred HHHHHCCEEEECCCCH--HHHHH----HHHHHHHHCCCC---CCHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8852122245078897--89999----999986662897---98899999994-06679899999999999999984778
Q gi|254780567|r 160 SRLKAATVVKISLPDD--DFLEK----VIVKMFADRQIF---IDKKLAAYIVQ-RMERSLVFAEKLVDKMDNLALSRGMG 229 (246)
Q Consensus 160 SRl~~g~~~~I~~pdd--e~~~~----il~k~~~~r~i~---l~~~v~~yl~~-r~~Rs~~~l~~~l~~Ld~~sl~~kr~ 229 (246)
T Consensus 299 yrL~~-~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~n~ier~~~--~~~~~~ 375 (469)
T PRK10923 299 HRLNV-IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTV--MAAGQE 375 (469)
T ss_pred HHHHH-HCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH--HCCCCC
T ss_conf 86442-401584654465349999999999999985999787899999999749999879999999999998--579982
Q ss_pred CCHH
Q ss_conf 7889
Q gi|254780567|r 230 ITRS 233 (246)
Q Consensus 230 ITi~ 233 (246)
T Consensus 376 i~~~ 379 (469)
T PRK10923 376 VLIQ 379 (469)
T ss_pred CCHH
T ss_conf 5477