HHsearch alignment for GI: 254780567 and conserved domain: PRK10923

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional.
Probab=98.56  E-value=2.9e-06  Score=58.40  Aligned_cols=186  Identities=15%  Similarity=0.193  Sum_probs=112.6

Q ss_pred             EECCCHH--HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----CCHHHHHH--HHHHH-----------
Q ss_conf             6536189--9999998510167884999878777868899999986276-----20135676--44454-----------
Q gi|254780567|r   44 LVHSAIE--QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAK--SLDSI-----------  103 (246)
Q Consensus        44 iv~~~N~--~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-----~~~~~~~~--~~~~~-----------  103 (246)
T Consensus       140 liG~S~~m~~v~~~i~~~a~-~~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfi~vnC~~~~~~~~e~eLFG~~~gaf~  218 (469)
T PRK10923        140 IIGEAPAMQDVFRIIGRLSR-SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT  218 (469)
T ss_pred             CEECCHHHHHHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCC
T ss_conf             54689999999999999858-89978998989826999999999748877999578767889977899997087667878


Q ss_pred             ----------HHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH----------CCCCCEEEEECCCCCCH---HHHHHHHH
Q ss_conf             ----------6666665334332100376-103354555431----------12342156403543200---22345667
Q gi|254780567|r  104 ----------LIDTRKPVLLEDIDLLDFN-DTQLFHIINSIH----------QYDSSLLMTARTFPVSW---GVCLPDLC  159 (246)
Q Consensus       104 ----------~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~----------~~~~~iilts~~~p~~~---~~~l~DL~  159 (246)
T Consensus       219 ga~~~~~g~~e~a~~GTLfLdeI~~L~~~~Q~kLl~~L~~~~~~~~g~~~~~~~d~RiIaat~~~L~~~v~~g~Fr~dLy  298 (469)
T PRK10923        219 GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF  298 (469)
T ss_pred             CCCCCCCCCHHHCCCCCEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECCCCHHHHHHHCCHHHHHH
T ss_conf             86424587366438992656636648999999999998559378579985122143799707879999866081779999


Q ss_pred             HHHHHCCEEEECCCCH--HHHHH----HHHHHHHHCCCC---CCHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             8852122245078897--89999----999986662897---98899999994-06679899999999999999984778
Q gi|254780567|r  160 SRLKAATVVKISLPDD--DFLEK----VIVKMFADRQIF---IDKKLAAYIVQ-RMERSLVFAEKLVDKMDNLALSRGMG  229 (246)
Q Consensus       160 SRl~~g~~~~I~~pdd--e~~~~----il~k~~~~r~i~---l~~~v~~yl~~-r~~Rs~~~l~~~l~~Ld~~sl~~kr~  229 (246)
T Consensus       299 yrL~~-~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~n~ier~~~--~~~~~~  375 (469)
T PRK10923        299 HRLNV-IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTV--MAAGQE  375 (469)
T ss_pred             HHHHH-HCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH--HCCCCC
T ss_conf             86442-401584654465349999999999999985999787899999999749999879999999999998--579982


Q ss_pred             CCHH
Q ss_conf             7889
Q gi|254780567|r  230 ITRS  233 (246)
Q Consensus       230 ITi~  233 (246)
T Consensus       376 i~~~  379 (469)
T PRK10923        376 VLIQ  379 (469)
T ss_pred             CCHH
T ss_conf             5477