HHsearch alignment for GI: 254780567 and conserved domain: PRK12402
>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=99.63 E-value=1.2e-14 Score=109.96 Aligned_cols=186 Identities=18% Similarity=0.151 Sum_probs=122.4
Q ss_pred CCCCEEECCCHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCH-------HHHH-------------
Q ss_conf 8454165361899999998510167-884999878777868899999986276201-------3567-------------
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLANIWSDKSRSTRF-------SNIA------------- 97 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~~~~~~-~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~-------~~~~------------- 97 (246)
T Consensus 13 ~~~dvv---Gq~~i~~~L~~~~~~~~~phlLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i~~~~ 89 (337)
T PRK12402 13 LFEDIL---GQESVVDHLSALAASGNLPHLVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYLVEDP 89 (337)
T ss_pred CHHHHC---CCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEECCC
T ss_conf 799803---97999999999997799876988892984899999999999679975678333116531135640010166
Q ss_pred ----------------HHHHHH----------HHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf ----------------644454----------6666665334332100376-1033545554311234215640354320
Q gi|254780567|r 98 ----------------KSLDSI----------LIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMTARTFPVS 150 (246)
Q Consensus 98 ----------------~~~~~~----------~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~~iilts~~~p~~ 150 (246)
T Consensus 90 ~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe-~~~~~~fIl~t~~~-~- 166 (337)
T PRK12402 90 RFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMER-YSETCRFIFSTTQP-S- 166 (337)
T ss_pred CHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCC-C-
T ss_conf 42344201533277378999999999861488778804999707131799999999988740-88766998723864-4-
Q ss_pred HHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 02234566788521222450788978999999998666289798899999994066798999999999999999847787
Q gi|254780567|r 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 (246)
Q Consensus 151 ~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~I 230 (246)
T Consensus 167 --~ii~tI~SRC---~~i~F~~~s~~~i~~~L~~I~~~E~i~~~~~~l~~ia~~s~GdlR~ain~Lq---~~~~~~~~~~ 238 (337)
T PRK12402 167 --KLIPPIRSRC---LPLFFRPVPDDEIRSVLESIAAAEGVEISDDGLDLIAYYAEGDLRKAILTLQ---LAAEAEGEVT 238 (337)
T ss_pred --CCCHHHHHHC---EEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH---HHHHHCCCCC
T ss_conf --4752477624---4543589899999999999999849998999999999986998999999999---9987279977
Q ss_pred CHHHHHHH
Q ss_conf 88999999
Q gi|254780567|r 231 TRSLAAEV 238 (246)
Q Consensus 231 Ti~lvk~v 238 (246)
T Consensus 239 ~~~~~~~~ 246 (337)
T PRK12402 239 TEAALEEL 246 (337)
T ss_pred CHHHHHHH
T ss_conf 18899998