HHsearch alignment for GI: 254780567 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.75 E-value=3e-17 Score=126.01 Aligned_cols=205 Identities=16% Similarity=0.153 Sum_probs=142.6
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCH-----HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 341558887766884541653618-----999999985101678849998787778688999999862762013567644
Q gi|254780567|r 26 EQLFFSFPRCLGISRDDLLVHSAI-----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 (246)
Q Consensus 26 ~Ql~l~~~~~~~~~~dnFiv~~~N-----~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~ 100 (246)
T Consensus 14 ~~aPLA~rmRP~-~Lde~v-GQ~hllg~g~~Lrr~i~~---~~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F~~lsAv~s 88 (726)
T PRK13341 14 SEAPLADRLRPR-TLEEFV-GQDHILGEGRLLRRAIKA---DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (726)
T ss_pred CCCCCHHHHCCC-CHHHHC-CCHHHCCCCCHHHHHHHC---CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 269856862999-877735-957542898289999976---999827888979999999999998874886799856203
Q ss_pred HH-----HHHH---------HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 45-----4666---------666533433210037610335455543112342156403543200223456678852122
Q gi|254780567|r 101 DS-----ILID---------TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 (246)
Q Consensus 101 ~~-----~~~~---------~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~ 166 (246)
T Consensus 89 gvkdlr~ii~~A~~~~~~~g~~tILFIDEIHRfNK~QQD~LLp~---vE~G~i~LIGATTENP~F~v-n~ALlSR~~--- 161 (726)
T PRK13341 89 GVKDLRAEVDAAKERLERHGKRTILFIDEVHRFNKAQQDALLPW---VENGTVTLIGATTENPYFEV-NKALVSRSR--- 161 (726)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHH---HCCCEEEEEEECCCCCCEEE-CHHHHHHCE---
T ss_conf 77999999999999987459965999862542588789987888---60683899970478974364-298883234---
Q ss_pred EEEECCCCHHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH---CCCCCHHHHH
Q ss_conf 2450788978999999998666-------28979889999999406679899999999999999984---7787889999
Q gi|254780567|r 167 VVKISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR---GMGITRSLAA 236 (246)
Q Consensus 167 ~~~I~~pdde~~~~il~k~~~~-------r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~---kr~ITi~lvk 236 (246)
T Consensus 162 vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GDaR~aLN~LElav~~~~~~~~~~~~i~~~~~~ 241 (726)
T PRK13341 162 LFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGVIHINLAIAE 241 (726)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEECHHHHH
T ss_conf 66743899999999999998767432566787759899999999759739999999999997074576883443599999
Q ss_pred HHHHHH
Q ss_conf 999867
Q gi|254780567|r 237 EVLKET 242 (246)
Q Consensus 237 ~vL~~~ 242 (246)
T Consensus 242 ~~~~~~ 247 (726)
T PRK13341 242 ESIQQR 247 (726)
T ss_pred HHHHHH
T ss_conf 998566