HHsearch alignment for GI: 254780567 and conserved domain: PRK13341

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.75  E-value=3e-17  Score=126.01  Aligned_cols=205  Identities=16%  Similarity=0.153  Sum_probs=142.6

Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCH-----HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             341558887766884541653618-----999999985101678849998787778688999999862762013567644
Q gi|254780567|r   26 EQLFFSFPRCLGISRDDLLVHSAI-----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL  100 (246)
Q Consensus        26 ~Ql~l~~~~~~~~~~dnFiv~~~N-----~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~  100 (246)
T Consensus        14 ~~aPLA~rmRP~-~Lde~v-GQ~hllg~g~~Lrr~i~~---~~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F~~lsAv~s   88 (726)
T PRK13341         14 SEAPLADRLRPR-TLEEFV-GQDHILGEGRLLRRAIKA---DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA   88 (726)
T ss_pred             CCCCCHHHHCCC-CHHHHC-CCHHHCCCCCHHHHHHHC---CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             269856862999-877735-957542898289999976---999827888979999999999998874886799856203


Q ss_pred             HH-----HHHH---------HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             45-----4666---------666533433210037610335455543112342156403543200223456678852122
Q gi|254780567|r  101 DS-----ILID---------TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT  166 (246)
Q Consensus       101 ~~-----~~~~---------~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~  166 (246)
T Consensus        89 gvkdlr~ii~~A~~~~~~~g~~tILFIDEIHRfNK~QQD~LLp~---vE~G~i~LIGATTENP~F~v-n~ALlSR~~---  161 (726)
T PRK13341         89 GVKDLRAEVDAAKERLERHGKRTILFIDEVHRFNKAQQDALLPW---VENGTVTLIGATTENPYFEV-NKALVSRSR---  161 (726)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHH---HCCCEEEEEEECCCCCCEEE-CHHHHHHCE---
T ss_conf             77999999999999987459965999862542588789987888---60683899970478974364-298883234---


Q ss_pred             EEEECCCCHHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH---CCCCCHHHHH
Q ss_conf             2450788978999999998666-------28979889999999406679899999999999999984---7787889999
Q gi|254780567|r  167 VVKISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR---GMGITRSLAA  236 (246)
Q Consensus       167 ~~~I~~pdde~~~~il~k~~~~-------r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~---kr~ITi~lvk  236 (246)
T Consensus       162 vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GDaR~aLN~LElav~~~~~~~~~~~~i~~~~~~  241 (726)
T PRK13341        162 LFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGVIHINLAIAE  241 (726)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEECHHHHH
T ss_conf             66743899999999999998767432566787759899999999759739999999999997074576883443599999


Q ss_pred             HHHHHH
Q ss_conf             999867
Q gi|254780567|r  237 EVLKET  242 (246)
Q Consensus       237 ~vL~~~  242 (246)
T Consensus       242 ~~~~~~  247 (726)
T PRK13341        242 ESIQQR  247 (726)
T ss_pred             HHHHHH
T ss_conf             998566