HHsearch alignment for GI: 254780567 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=99.78 E-value=6.8e-18 Score=130.02 Aligned_cols=199 Identities=19% Similarity=0.194 Sum_probs=136.2
Q ss_pred CCCCCCCCCEEECCCHHHH-HHHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH----HH--
Q ss_conf 7766884541653618999-999985101-678849998787778688999999862762013567644454----66--
Q gi|254780567|r 34 RCLGISRDDLLVHSAIEQA-VRLIDSWPS-WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI----LI-- 105 (246)
Q Consensus 34 ~~~~~~~dnFiv~~~N~~A-~~~i~~~~~-~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~----~~-- 105 (246)
T Consensus 7 ~RP~-~lde~v-GQ~hllg~~~~L~~~i~~~~~~s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA~~~gv~dir~ii~~ 84 (417)
T PRK13342 7 MRPK-TLDEVV-GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAEFEALSAVTSGVKDLREVIEE 84 (417)
T ss_pred HCCC-CHHHHC-CCHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 4999-888857-98776089719999997699975998896999899999999998689889961410388999999999
Q ss_pred ------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHH
Q ss_conf ------66665334332100376103354555431123421564035432002234566788521222450788978999
Q gi|254780567|r 106 ------DTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 (246)
Q Consensus 106 ------~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~ 179 (246)
T Consensus 85 a~~~~~~~~tilfiDEIHRfnK~QQD~LLp~---vE~g~iiLIgATTENP~f~-in~aLlSRc~---vf~l~~L~~~di~ 157 (417)
T PRK13342 85 AKQSRLGRRTILFIDEIHRFNKAQQDALLPH---VEDGTITLIGATTENPSFE-VNPALLSRAQ---VFELKPLSEEDLE 157 (417)
T ss_pred HHHHHCCCCEEEEEECHHHCCHHHHHHHHHH---HHCCCEEEEEECCCCCHHH-CCHHHHHHHH---HEECCCCCHHHHH
T ss_conf 8863148965999978200588999999875---1126569997415792253-4898985657---0020589999999
Q ss_pred HHHHHHHHH-----CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999998666-----289798899999994066798999999999999999847787889999999867
Q gi|254780567|r 180 KVIVKMFAD-----RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 180 ~il~k~~~~-----r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
T Consensus 158 ~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~-~~~~~~~~i~~~~~~~~~~~~ 224 (417)
T PRK13342 158 QLLKRALEDERGLGRKLELDDEALDALARLADGDARRALNLLELAA-AAAAGGEVITLELLEEALQRR 224 (417)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCCCCCCCHHHHHHHHHHC
T ss_conf 9999999877433788776999999999814985999999999998-525899734899999998441